Query= MSMg01no386_o04.b1 MSMg01no386_o04.b1 CHROMAT_FILE:
MSMg01no386_o04.b1 PHD_FILE: MSMg01no386_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:47 2005
(580 letters)
>mm_chr2_35987400_35988380
Length = 981
Score = 1031 bits (533), Expect = 0.0
Identities = 560/569 (98%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 10 ttccagggcttcccgggctacgcagagaaaccctgtcttgaaaaaccaaaaaaccaaaaa 69
||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttccagggcagccagggctacacagagaaaccctgtcttgaaaaaccaaaaaaccaaaaa 269
Query: 70 ggttaaggagctgggatacaggtatatgaaagagaatgaaggatctggtgaagaggaaat 129
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggttaaggagctgggatacaggcatatgaaagagaatgaaggatctggtgaagaggaaat 329
Query: 130 agcaggaagcggcagcagtgtttagttgggtaagcttaattaggaaaactggaacacttt 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agcaggaagcggcagcagtgtttagttgggtaagcttaattaggaaaactggaacacttt 389
Query: 190 ctgcaaacttcccttgcaagtcatcagaagattagagcttttgattcccctgacaataca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgcaaacttcccttgcaagtcatcagaagattagagcttttgattcccctgacaataca 449
Query: 250 agtagcccgtgctcatactcctccaatgctggggagcaactatgttaattacttaactag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agtagcccgtgctcatactcctccaatgctggggagcaactatgttaattacttaactag 509
Query: 310 gtccactattttctgccctttgaggatctaaaagttcaggtatttgagcaacttgaagga 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtccactattttctgccctttgaggatctaaaagttcaggtatttgagcaacttgaagga 569
Query: 370 aatgacgcctccacaagactcatgaaatttagcaaagcgacactaagctttcaggtgaat 429
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatgatgtttccacaagactcatgaaatttagcaaagcgacactaagctttcaggtgaat 629
Query: 430 gaaccataagctttgattggcagctgtttttt-gaaaataagtgatgtaataaatcagtt 488
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 630 gaaccataagctttgattggcagctgtttttttgaaaataagtgatgtaataaatcagtt 689
Query: 489 tatttgagagaaaaattattttaagataaggaaatcatagaaggaaaatagagaaaattg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tatttgagagaaaaattattttaagataaggaaatcatagaaggaaaatagagaaaattg 749
Query: 549 ttttggcaccacagaaatagggataccac 577
|||||||||||||||||||||||||||||
Sbjct: 750 ttttggcaccacagaaatagggataccac 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_o04.g1 MSMg01no386_o04.g1 CHROMAT_FILE:
MSMg01no386_o04.g1 PHD_FILE: MSMg01no386_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:47 2005
(645 letters)
>mm_chr2_36271644_36272689
Length = 1046
Score = 1064 bits (550), Expect = 0.0
Identities = 622/646 (96%), Gaps = 1/646 (0%)
Strand = Plus / Minus
Query: 1 atggaaccagagctgatacataaggtcaccacaagaacccatctatattactccaaacaa 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1046 atggaaccagagctgatacataaggacaccacaagaacccatctatattactccaagcaa 987
Query: 61 tccctaaatattcccataaaacagaaacacaagaaagagaccataaaaccagctttatgg 120
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 986 gccctaaatattcccataaaacagaaacacaggaaagagaccatgaaaccagctttatgg 927
Query: 121 agatgattgtaattcttaatgagaaaactaataaatgtctttaaaattcagacaagcata 180
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 agacgattgtgattcttaatgagaaaactaataaatgtctttaaaattcagacaagcata 867
Query: 181 aacaaacaattgaaggaaattattaaaaacctttttaaaaggtcaagagaactgatttct 240
|||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 866 aacaaacaattggaggaaaatattaaaaacctttttaaaaggtcaagagagctgatttct 807
Query: 241 ctctgcttcttcttctggaccctactcctaataataatgcagatatgcactccatt-ccc 299
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 806 ctctgcttcatcttctggaccctactcctaatagtaatgcagatatgcactccattcccc 747
Query: 300 cttgactttattcctgaagaactactgccacctttgaagatcaggcgagctccatatgct 359
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 746 cttgcctttattcctgaagaactactgccacctttaaagatcaggtgagctccatatgct 687
Query: 360 cagtccactggcaccatactctctggggaaagaactgaggacttagcctcttcttgtccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cagtccactggcaccatactctctggggaaagaactgaggacttagcctcttcttgtccc 627
Query: 420 ctttgtgatccatcttccagttcatatccctacctacaatcttggatcctcactacattc 479
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 626 ctctgtgatccatcttccagttcatatccctacctacaatcttggatcctcgctacattc 567
Query: 480 ccccagaaacagttctgcctgcatgtctctgtcttgtgccactggggataattgggccta 539
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 566 ccccagacacagttctgcctgcatgtctctgtcttgtgccactggggatatttgggccta 507
Query: 540 cagacaccatggaccaccagttctgcctccgtcccttggggtatactaccacccaagaca 599
||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 506 cagacaccagggaccaccagttctgcctccatcccttggggtatactgccacccaagaca 447
Query: 600 accagaggactgaagataatagggacttaccctcttcctataaccc 645
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 446 accagaggactgaagataatagtgacttaccctcttcctataaccc 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
