BAC Information

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BAC

Clone NameMSMg01-387K24
Chromosome2 (Build37)
Map Location 39,817,819 - 39,818,208
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387K24.T7 (MSMg01no387_k24.b1)MSMg01-387K24.TJ (MSMg01no387_k24.g1)
ACCAG490362AG490363
length956762
length of high quality
(start - end)		---390 (84 - 473)
definitionCHROMAT_FILE: MSMg01no387_k24.b1 PHD_FILE: MSMg01no387_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:49 2005CHROMAT_FILE: MSMg01no387_k24.g1 PHD_FILE: MSMg01no387_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAATATAACNNNNNNCCNNNNNNNNNNNNNNNNNCCNNNCNCCTCCCC
NNNNNCCNNNCNNCCCCNCNNNNCNCCNCCCCCCCCCNCNCCCCNNNNCC
CCCCCCCCCNNNCCNNNNNNNNCCCCNCNCCCCCCCCNCCNNNNCCCCCC
CCNCCCNCCNNNCCCCCNNNCCCNCCCCCCCCCCCCCNCCNNNCCNNNNN
CCNNNNNNNCNNNNNCNNCCNCCCCCCCNCCCCNNNNNCCCCCNNNNCNN
CCCCCNNCCCCCCNNNCCCCCACCTCNCCCCTCNNNNCNCCCCCCCCCCC
CCCCNNCAACCCCCCCNCNCCTNNCCTCCCCNNCCCNCNNNCCNTCCCCC
CCCCTCCCCCCCCCCNCTTCCNCTCCTCCCCCCCTCNNNNCANNCCCNCC
CCCTTCCCCCTTTTCCCCTCTTACCACNCCCNCNNTACAAAAANCCCCCN
TAACCANNNCNNTNCNCAACACANCCCCCCCCCNCCCCNNCCCCNCCCCC
CCCCCNNNCCCCCNNNCCCCCCNCCCCANTCCAACCTCACCAAACCCAAC
CCNCCCAATCCNCCCACCCCCCCCCCCCTTTTCCCTCCCCTCCACTCNTT
NCTNNTTTTTTTCTTTCCCCCCNTTTTNNNNNNNNNNCNNNNCTCTACTA
CCCATTCCNNNNCCCNCTTTAATACCAACATAACATTAATTAANCCAAAA
ACAACATAAACCTTNNAAAAAAAATAANNACAAATTNNAATCAAAAAACT
CCTACATTAAAATATTANACACAAATTCCCNCTTTTCCCAAAATANCAAC
AAAATCAAAAAAACACATTAAACATTTAACCAAATAANAANTACTATATA
TAACTAANACAATCTCCTAAAATAAATCAACCTCTTAAAAACCTAAACCT
ACACTATTNCTCTCAACTAATCACAATAAACCAACTTCCACTCCTCTAAC
CAAATA

NTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTTGGAAGGTAAG
CAAAACAAAAATCAGTTTCAGGCTGTCGGAGTCAGTAACTGTATTTCCGA
TGTTAAGCCCTTGCGTTTAAAATCCAATGATATAAAATACAATATTGACT
CACAAGGTAAGATCAACTGGAAACTACTTACCCTTACCAATTACAGACAT
AGGAGAATCACATGCAAACACCCCTATTGCTTTGTGAACATCAGTGTCAT
AGAAAACAAGCACAATTTTAGTCTCTCCTCTTTATAATAGTCATTGTTAT
TACCCATGACTTCCTAGAGGAGGAAGAGCAGCACAGAACCTTGTGGAAAT
AAGAATGTATGTAGAAAGATTTCTCTCTGTGTCTTTGACTTACTTCTCTT
GGCTTTCTTTTGCACCATATTATCTGTGAAGACCAACTGCATGCCANGAT
GTGAGCTCTTCGGATGACCTACTTAAAGGTGGTTTGCACTTCCACAGTTC
AAAAACAAGAACCCTTGAGGAAAAGAAAACTCCGGAAGGCGCTTTATTTA
AAAACCCTGCTTGGAAAGTAACTAACCTTCCCTTTTCCTGTTGAAATTGG
CAAAAGGTCCTCTCCAAGGAACCCCCCCGCGCTATTAAAACGGGTTGTGA
ATACTAGCTTTTCGGAAACCCTTCCCGCTGGTCCAATTAAATTCTCCTCA
TTTCAAACGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_k24.g1 MSMg01no387_k24.g1 CHROMAT_FILE:
MSMg01no387_k24.g1 PHD_FILE: MSMg01no387_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:49 2005
         (390 letters)



>mm_chr2_39817619_39818408
          Length = 790

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggttggaaggtaagcaaaacaaaaatcagtttcaggctgtcggagtcagtaactgta 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 agaggttggaaggtaagcaaaacaaaaatcagttgcaggctgtcggagtcagtaactgta 260

                                                                       
Query: 61  tttccgatgttaagcccttgcgtttaaaatccaatgatataaaatacaatattgactcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccgatgttaagcccttgcgtttaaaatccaatgatataaaatacaatattgactcac 320

                                                                       
Query: 121 aaggtaagatcaactggaaactacttacccttaccaattacagacataggagaatcacat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtaagatcaactggaatctacttacccttaccaattacagacataggagaatcacat 380

                                                                       
Query: 181 gcaaacacccctattgctttgtgaacatcagtgtcatagaaaacaagcacaattttagtc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaacacccctattgctttgcgaacatcagtgtcatagaaaacaagcacaattttagtc 440

                                                                       
Query: 241 tctcctctttataatagtcattgttattacccatgacttcctagaggaggaagagcagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcctctttataatagtcattgttattacccatgacttcctagaggaggaagagcagca 500

                                                                       
Query: 301 cagaaccttgtggaaataagaatgtatgtagaaagatttctctctgtgtctttgacttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaaccttgtggaaataagaatgtatgtagaaagatttctctctgtgtctttgacttac 560

                                         
Query: 361 ttctcttggctttcttttgcaccatattat 390
           |||||||||||||||||||| |||||||||
Sbjct: 561 ttctcttggctttcttttgcgccatattat 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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