BAC Information

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BAC

Clone NameMSMg01-388J05
Chromosome2 (Build37)
Map Location 85,747,497 - 85,748,039
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024
Downstream geneOlfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388J05.T7 (MSMg01no388_j05.b1)MSMg01-388J05.TJ (MSMg01no388_j05.g1)
ACCAG491039AG491040
length838755
length of high quality
(start - end)		---544 (81 - 624)
definitionCHROMAT_FILE: MSMg01no388_j05.b1 PHD_FILE: MSMg01no388_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:56 2005CHROMAT_FILE: MSMg01no388_j05.g1 PHD_FILE: MSMg01no388_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATAANNNNNNNCNCCNNNNNNNNNNNNNNNNNNNNNNNCTTAAXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCACAATTATGATATAAAAATATCTGCTGCACCTAACAAGTAAGTACAGA
GAAAAAAAATAACACANGTTTGAAAGCCTTAAAGNCGATTTTATGATTAN
TGANCCGGATTGAGAGGGAGAGTAGAATAGAATGTAATGTCGGGCTNCTN
NNNNNNNNNAATAAAAAAAAAAAAAAAANNNNNGAAANNNTTTTTTAAAA
TTTTTTTGTTTTTTTTTAAAGTTAAAAAAAAAAGGAAAATTTCAAAAATT
TTTTTTTTTTTTTCTTTTTTAAAAAAAAATTTTTTCGGGGAGGAGGGTTA
ATATTCCCCAAAAAAAAAAAAATTTTTTTTTTTTTTTTGGNCTNNNNNTN
CNNNNNNNNNNNNNNNNCNNNNNTTNNNNNCNCCCNCCCCCCNCCCCCCC
CCCCCCCNCCNNCCCCCCNCNCNCNCCCCCCCCNCNCNCCCCCNCCCCNN
NCNNCNNCNCCNNNCNCCCCCCCNCNNCCCCCCCCNNNNNNNNNNNNCNN
CNNCCCCNNCNCNCCNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCNNCCCCCACCCCAATTTCCTCCTCCCTCCTTTTTC
TCTCCTCTCCTCTTTTTTCACTCCTTNTTTTTCTCTTCTCCTCTTNCTTC
CCNCTCCTCTCCCTTTCACTTCCTTCTCCACTACTATCCCTTTTTCTTCC
ATCCTCCCTTTACATTTATTTATTTTTATATTATTTTG

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTGTCCTTGGTTG
AGAACTTATATCAAAACACACACACACACACACACACACAAGTGCACACA
AGTTCACACACAGGAATGCACGCACAAGCATACATAGCATACATATACAT
ACATACATACATACATACATACATACATACATACATACATACAAAAAGTA
CTTATATATACACATACATAGGGAGCTTAGAAAAGAGCATGTCTTTGATC
AAAGCATGATTCACTTGCCGAGAAGATCCTGGGCTCAGTATATCATCAGG
TTTCAGGATAAGCCCCCCAAAAGGAGCTTCTTATAATGAAGAAGAAAGGA
GCTTCACCATTTGTTTCTCTCGTCAGTTTTACTCAAATATTTTGACATTT
CTTTTCTCAGGAGAAACTTATAAAATAAATTAAATGCATGTTGCTGTGAG
AATATACATTCCTATTCCAGATTCTATGGTTTTGTGTTTTGAAAAGTTAA
AAGGTAAGTCAAAAAAACTATTATGCAGAGAAACTAGGACTCAGAATAGA
AAATGACTCTAAATCGGGGCCTTAGCAGAGATGTCTGGCCTTCTCTCCTT
GCAGAATATGTCTGTCCTCCTAGGCCACCAGTTGGCATGCCTGCCTCTGT
TTGGGAGAATCTGAAGCTTTCTCCCTATGTTATAATTCATCGTATAATAC
TTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_j05.g1 MSMg01no388_j05.g1 CHROMAT_FILE:
MSMg01no388_j05.g1 PHD_FILE: MSMg01no388_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:56 2005
         (544 letters)



>mm_chr2_85747297_85748239
          Length = 943

 Score =  975 bits (504), Expect = 0.0
 Identities = 533/552 (96%), Gaps = 17/552 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagtgtccttggttgagaacttatatcaaaacacacacacacacacacacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagtgtccttggttgagaacttatatcaaaacacacacacacacacacacacaca 260

                                                                       
Query: 61  --------agtgcacacaagttcacacacaggaatgcacgcacaagcatacatagcatac 112
                   ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacacaagtgcacacaagtgcacacacaggaatgcacgcacaagcatacatagcatac 320

                                                                       
Query: 113 atatacatacatacatacatacatacatacatacatacatacatacatacaaaaagtact 172
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 321 atatacatacatacatacatacatacatacatacatacataca--------aaaagtact 372

                                                                       
Query: 173 tatatatacacatacatagggagcttagaaaagagcatgtctttgatcaaagcatgattc 232
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatatatacacatacatagagagcttagaaaagagcatgtctttgatcaaagcatgattc 432

                                                                       
Query: 233 acttgccgagaagatcctgggctcagtatatcatcaggtttcaggataagccccccaaaa 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acttgccgagaagatcctgggctcagtatatcatcaggtttcaggataagccccccaaaa 492

                                                                       
Query: 293 ggagcttcttataatgaagaagaaaggagcttcaccatttgtttctctcgtcagttttac 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggagcttcttataatgaagaagaaaggagcttcaccatttgtttctctcgtcagttttac 552

                                                                       
Query: 353 tcaaatattttgacatttcttttctcaggagaaacttataaaataaattaaatgcatgtt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcaaatattttgacatttcttttctcaggagaaacttataaaataaattaaatgcatgtt 612

                                                                       
Query: 413 gctgtgagaatatacattcctattccagattctatggttttgtgttttgaaaagttaaaa 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gctgtgagaatatacattcctattccagattctatggttttgtgttttgaaaagttaaaa 672

                                                                       
Query: 473 ggtaagtcaaaaaaactattatgcagagaaactaggactcagaatagaaaatgactctaa 532
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggtaagtcaaaaaa-ctattatgcagagaaactaggactcagaatagaaaatgactctaa 731

                       
Query: 533 atcggggcctta 544
           ||||||||||||
Sbjct: 732 atcggggcctta 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space:   498222
Effective search space used:   498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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