BAC Information

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BAC

Clone NameMSMg01-389B13
Chromosome2 (Build37)
Map Location 39,477,475 - 39,477,834
singlet/doubletsinglet
Overlap genenone
Upstream genePsmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389B13.T7 (MSMg01no389_b13.b1)MSMg01-389B13.TJ (MSMg01no389_b13.g1)
ACCAG491433AG491434
length776743
length of high quality
(start - end)
361 (61 - 421)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no389_b13.b1 PHD_FILE: MSMg01no389_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:35 2005CHROMAT_FILE: MSMg01no389_b13.g1 PHD_FILE: MSMg01no389_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTCAGTTTGGGTTTTCTTTATTGCTTTCATTTGCATTTCAGG
TCTTGAACAGTTTTATTTGTTTTGTTCAACTTGTTTTTCCTTGTGTTTCA
TAGCACTCTTTAAGGGATTTAGATTTCTTCTTTTCTTTTTTCTTTCTTTT
TTAAAGAGATGATGATTTCTGAGTGTGTCTTTGTTGGATGGTTATTTTCT
TCCTGGGTTTCTGTTTCCTCTCTGTTCTTCTGGTTGGAGTGGCTTGTGGT
CTTCACTCTAGTTGAAGGCTAGGCTTCTGATGGTCTGGATTGCTTCATGT
CTAGCAAGAGGTTACCACCTTAGCTTGGGGCTGGAGTTCTGGCGAAGTAC
ATGGTCTCTGATCTGATTGGCTGGTTGTCTGGCCTTCATGATGGTAGCCT
GCATTCTGGTGTGCTAAGAGGCTTCCGCCTGATCCTTACACAACTAGTCT
GCTCTCTGTACCGCACCACGCCGGTCCCTGCTCTATTACCGTCCCTTTCC
CGCTCGCCCTACATTTGGCGGATCTGATATCACACCTTGTCCCCCCCCCT
CGTTTCCGCCTCCCTCTCTCTTCTCCACGCACCCTGACCTCCCTTCCTCC
TCTTCCTTCTCCGCTTCTCCCTCCCTCCCCCCTCTTATCCTTCTCTCTCC
GCCCCCCTTCTTTTTCTCCTCCCCTTCCCTCCCTCCTTTTCTCCCCCTCC
CTTCCGTCCATCCCCTCTTTCTCCTN
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAACACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTCGTATATTAAACCTTCCCTGCATCCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCG
AGAATTTTATTGAGGATTTTTGCTTCTTTTTTCATAAGAGAAATTGGTCT
GAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAA
TAGTGGCTTCATTAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTG
TGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGAC
TATTAATAACTGCTTTCATCTCTTTAGGTGATATGCCACTGTTTATATGC
CCCAATTGATCCCGACTCTATTTTTTCCCTTGCTATTTGGCCCCCAAATT
GCCCCTTTTTCTTTTTTTTTTTCAGCTTCCGACAACTTACCCCTTTTCCC
CAAACACCTTGTATGTCTCTTCCCCCCTCTCCTCCCCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_b13.b1 MSMg01no389_b13.b1 CHROMAT_FILE:
MSMg01no389_b13.b1 PHD_FILE: MSMg01no389_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:35 2005
         (361 letters)



>mm_chr2_39477275_39478035
          Length = 761

 Score =  642 bits (332), Expect = 0.0
 Identities = 353/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtttgggttttctttattgctttcatttgcatttcaggtcttgaacagttttatttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttgggttttctttattgctttcatttgcatttcaggtcttgaacagttttatttgt 260

                                                                       
Query: 61  tttgttcaacttgtttttccttgtgtttcatagcactctttaagggatttagatttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgttcaacttgtttttccttgtgtttcatagcactctttaagggatttagatttcttc 320

                                                                       
Query: 121 ttttcttttttctttcttttttaaagagatgatgatttctgagtgtgtctttgttggatg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctcttttctttcttttttaaagagatgatgatttctgagtgtgtctttgttggatg 380

                                                                       
Query: 181 gttattttcttcctgggtttctgtttcctctctgttcttctggttggagtggcttgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttattttcttcctgggtttctgtttcctctctgttcttctggttggagtggcttgtggt 440

                                                                       
Query: 241 cttcactctagttgaaggctaggcttctgatggtctggattgcttcatgtctagcaagag 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 cttcactctagttgaaggctaggcttctgatggtctggatagcttcatgtctagcaagag 500

                                                                       
Query: 301 gttaccaccttagcttggggctggagttctggcgaagtacatggtctctgatctgattgg 360
           ||||||||| ||| |||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 501 gttaccaccctagtttggggctggagttctggtgaagtacatggcctctgatatgattgg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)