BAC Information

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BAC

Clone NameMSMg01-389M23
Chromosome2 (Build37)
Map Location 33,730,155 - 33,730,565
singlet/doubletsinglet
Overlap gene2610528K11Rik
Upstream gene9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M23.T7 (MSMg01no389_m23.b1)MSMg01-389M23.TJ (MSMg01no389_m23.g1)
ACCAG491976AG491977
length758745
length of high quality
(start - end)
404 (75 - 478)481 (83 - 563)
definitionCHROMAT_FILE: MSMg01no389_m23.b1 PHD_FILE: MSMg01no389_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:32 2005CHROMAT_FILE: MSMg01no389_m23.g1 PHD_FILE: MSMg01no389_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCAACCACCTTACCTCAAGCTGTTAGTGTGGAATGCTGAGGGC
TCATATCAGGACGTAATTTCCACTCAAACACAAAAGCACATTATCATATA
TTCCAGGCTGGTCTCAAACTCCTGGCTTCCTTCCTCTTCTTCCCTCCTGA
GTGCTTACAAGTGTGTATGCCTAGCTTTACGTGGTGCTAGGGATGGAACC
CTATATGCAGGTTAGACAAGCATGTTACCCACTGAGCTACCTGCCCAGCC
CCACATTCTTAACTCTACTCCCAACTGCCTCATTTCTGACCAGGGACCAA
CATTGGACACCCCTGGCAAAGTCTGTACCTCACACAGTGCTCCTGTGTGG
AGCTAGGCTTCCGAACCACAGCTAAACCTTCTGCAGACAGAGAATTCAAT
GAGCTCCAAAACCAGAGAGCGCATCTGGGCATAGGCAGAGGAGGTGTGCG
CGGCTCTAGGCTCCACACCTGTAAGACAGTGTCTGAACCAGAAAGTAAAC
CTTGGNGGGCCCCAGCTTTCCCCCCACTGTAAAATGAGGTCTTGATCCAC
ACAGGGGCTGTTGCCGAACCCGACCGACCATATCCAAGAGGGCCCCACAA
CAGCACCACGAAGCCCTCCTAACAAACGACGTGGCACTGAAACGCTTAAG
GGCCCGGGCGTTCCCAAAGCCCATCTCGTCCTACCTCCCCCACAAGCAAC
CCCCCTGT
CCCCCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCCAATGGGAAACC
CTGTCTCAAAAATAGGAAGAACGACCAATAAAATGGCCTGGTGGACAAAG
GTGCGTGTGCCAAGCTTGGTGGTCTGAGTTGGATCCCTGGGACCCACCTG
GTAAGAGAGAGAAATGACTCTCCAACGTTGTCCTCTGATTTCCACACGCG
TGCAAGCACACACACGCACACGTGCACACACACACTTACACACACATGCA
CACCATAAATAAAGATAATAAAGATACCTTGTTTTTTGTTGGGGGGGGCG
GCTGGAGAGGGTAAGAGCACTTACTGCTCTTATAGAGGACCTGAATTTGA
TTTCCAGCACCCACAGGGTGGCTCATAACCTTCTGTAACTTCAGCCTCGG
GCTCTGTCACTGTTTTCTGGCCCCCGTGGGCACTGTCCGTGCATGTGTTA
CAGAAACATACATGGAGGCAAAACATTCCTACATAAAATAAAAGAAATAC
GGGTCTTTTTATTGTTTTTTTAGATTACCTTACTTTATGGGTATGAGTGC
TTGGCCTGCACACACGTATGTGCACCACATGCATGGCCAGTGCCCCCGAA
GGTCAAAAGGGGCATTGGTTTCCCTAAACCTGGGTCATGGCCTGCCGTGA
GCCCTTGTGCCGCTGCTTGGAACCAAACCGGCTCCCCTGCTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m23.b1 MSMg01no389_m23.b1 CHROMAT_FILE:
MSMg01no389_m23.b1 PHD_FILE: MSMg01no389_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:32 2005
         (404 letters)



>mm_chr2_33729958_33730765
          Length = 808

 Score =  721 bits (373), Expect = 0.0
 Identities = 399/411 (97%), Gaps = 7/411 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgttagtgtggaatgctgagggctcatatcaggacgtaatttccactcaaacacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agctgttagtgtggaatgctgagggctcatatcaggacgtaatttccactcaaacacaaa 257

                                                                       
Query: 61  agcacattatcatatattccaggctggtctcaaactcctggcttccttcctcttcttccc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 258 agcacattatcatatattccaggctggtctcaaactcctgtcttccttcctcttcttccc 317

                                                                       
Query: 121 tcctgagtgcttacaagtgtgtatgcctagctttacgtggtgctagggatggaaccctat 180
           ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 318 tcctgagtgctcacaagtgtgtatgcctagctttatgtggtgctagggatggaaccctgt 377

                                                                       
Query: 181 atgcaggttagacaagcatgttacccactgagctacctgcccagccccacattctt---a 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 378 atgcaggttagacaagcatgttacccactgagctacctgcccagccccacattcttctta 437

                                                                       
Query: 238 actctactcccaactgcctcatttctgaccagggaccaacattggacacccctggcaaag 297
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 actctactcccaactgcctcatttctgaccagggactaacattggacacccctggcaaag 497

                                                                       
Query: 298 tctgta----cctcacacagtgctcctgtgtggagctaggcttccgaaccacagctaaac 353
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctgtatgtacctcacacagtgctcctgtgtggagctaggcttccgaaccacagctaaac 557

                                                              
Query: 354 cttctgcagacagagaattcaatgagctccaaaaccagagagcgcatctgg 404
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttctgcagacagagaattcaatgagctccaaaaccagagagcgcatctgg 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 808
Length adjustment: 9
Effective length of query: 395
Effective length of database: 799
Effective search space:   315605
Effective search space used:   315605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)