BAC Information

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BAC

Clone NameMSMg01-390P12
Chromosome2 (Build37)
Map Location 38,836,921 - 38,837,108
singlet/doubletsinglet
Overlap genenone
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652
Downstream geneLOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390P12.T7 (MSMg01no390_p12.b1)MSMg01-390P12.TJ (MSMg01no390_p12.g1)
ACCAG492854AG492855
length763740
length of high quality
(start - end)
188 (137 - 324)518 (57 - 574)
definitionCHROMAT_FILE: MSMg01no390_p12.b1 PHD_FILE: MSMg01no390_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:02 2005CHROMAT_FILE: MSMg01no390_p12.g1 PHD_FILE: MSMg01no390_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCCCCTCTATAATTTGCGGNCGCTAAANGAATCACTACATCCGAGAC
CACGCGNNGGAATATAGNAGTACCACCCCGACTCCCCAGAGNGCAGAACC
TGGCACATGGCTGCGTTCATGTTTTCTTTCTAACAGTGCTGGGCATGGAA
TGTCAGTCCTCACACAGGCTAGGGAAGAACTCTACAACTGAGCTACAACC
TGGCCTCAACAGACAGACACCTAGACAGATGGACGAGTGGGTCCGGCCCA
GAAGGGACCTCACACACATGCTCTGGGTCATGGGAATTGTTGAAGCATCC
TAGGCGGAGCTCAGCAGCTGAGCTTTTTTTAACTTTCGTAAGTAGCTGGG
AGGTACCATGGAGAGTAATTTTATTTTTCTTTTGGGCCTCCCAGATGAGT
TAAATATTTTTAATGACCATCATTCACGAGAGGTTGTGTCATTTTTACCA
AAACAAACCTTTTATTTTTTTAAAAAAGTGAAGAACAACAACCATTTTTT
TTTTTTAACTATGGGCCCCTGTTGCTGCCCCCCCACCCTCTTCCCTCCTC
CTTCTCCATCCCCCCCCCCCTCCCCCCCTCTCTTTCCCCCTCTCCCCTAT
CCCCCCACCTTTCCCCCCCCCCCTCCCATCTTCCCCCCACCTCCCCCTCT
TCCACCCTCACCCCCCCCTCCCCCTTTTTTTTTCTCTTTCTCTCCCCTAC
TTCCACCCATACCCTTCTCATCCCTTTCCTCATCTCCTCCCTTCCTCTCT
CCTCCTCCCCCCN
CCCCCCCCTATGATATGTGTAGGCCTGGNGGNCGCCTGGCTTCCAAACAG
GGGTNGAACTATAGAAGGTCCCGCGAAATTCTTGAGTCCAGTTGGTGGAA
CTGTTTGGGAAGAATTAGGTATGGCCTTATTAGAGGAATGTGTCACTTGG
GGTAGGTTTTAAAGTTTCAAAAGCCCAAGTCATTCCCAGTTAGCTTTCTC
TCTCTGCCCTGTGCTTATGGATAAGATGTAAGCTCTCAGCTACTGCCCCA
GCACCGTGCCTGCCTGCCAACTGCCATGTTCTTCTCCAGGATGGTCATGG
ACTCTACCTAGCCTTCTGAAACTATATTTTCCAGTAAATTATTCTTCCTG
TGTTTTGCCTTCATCATGATGTCTTACTACAGCAATAGAAAAGTAATTAA
GGCAAAATTGATATGCTTTGGGTTTTTTTCCTTGCTATGTAGCATGTATG
TAGACCAGGCTAGCCTTGAACAGATGATGTTCTACTTAGCTTCTTCAGTG
CTGGGTTTACAGGGATGTACCACTACTCTTTGCTATATCTTTTACTTTAT
GTATATGTATATCAGTATTTTCTCTGTATGTATGTATATATACCATGTGT
ATGACTGGTGTCCACAGAAAGCCCGAAGAGAGCATCCAGATTCCATAAGA
ATTGTAAGTTATATGTTTGTTTTGGAACTACCCATGGGGCATATTTGGCA
AAATAAATCCTGGATCCCCCTGGGAAAAAGAGGACCGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_p12.b1 MSMg01no390_p12.b1 CHROMAT_FILE:
MSMg01no390_p12.b1 PHD_FILE: MSMg01no390_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:02 2005
         (188 letters)



>mm_chr2_38836721_38837308
          Length = 588

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgggcatggaatgtcagtcctcacacaggctagggaagaactctacaactgagctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgggcatggaatgtcagtcctcacacaggctagggaagaactctacaactgagctac 260

                                                                       
Query: 61  aacctggcctcaacagacagacacctagacagatggacgagtgggtccggcccagaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctggcctcaacagacagacacctagacagatggacgagtgggtccggcccagaaggg 320

                                                                       
Query: 121 acctcacacacatgctctgggtcatgggaattgttgaagcatcctaggcggagctcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctcacacacatgctctgggtcatgggaattgttgaagcatcctaggcggagctcagca 380

                   
Query: 181 gctgagct 188
           ||||||||
Sbjct: 381 gctgagct 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)