BAC Information

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BAC

Clone NameMSMg01-391N03
Chromosome2 (Build37)
Map Location 125,224,443 - 125,224,588
singlet/doubletsinglet
Overlap geneFbn1
Upstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698
Downstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391N03.T7 (MSMg01no391_n03.b1)MSMg01-391N03.TJ (MSMg01no391_n03.g1)
ACCAG493502AG493503
length753860
length of high quality
(start - end)
408 (61 - 468)146 (83 - 228)
definitionCHROMAT_FILE: MSMg01no391_n03.b1 PHD_FILE: MSMg01no391_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:09 2005CHROMAT_FILE: MSMg01no391_n03.g1 PHD_FILE: MSMg01no391_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGCGCTAAACGACTCACTATATTTCGACAATCCGCGGAATTCAGTTAA
GGTCGCCCGCTGCTTTAGTAAAGTGGCAGTGGTATGTTCTCCTCTAAGGT
CCATGACTTCACGAGTCGTGGGTAGCTGGCAGGTCTCCAGAACTAGGCAT
GGTCTCCCTCATGTTGAGCTGGCCTTAAGTCCAATTAGAGAGCTGTTGGT
TACTGCCAAGCTATAAGTGCCACTATTGCATCTTACCATGCTGGTCATTG
TTGTAGTTCATGGACATCAGAGCTGGGTAAGGCTATGAACTGCTTCCCTC
CTATGGAAGCTTCTCTTATAACCTTCTGGTACTATAAAAGCTAATCCTCA
GGAAAAAGGCTTCCTGGTCAGATCCACCTTGTAGCCTCGGAGTCCTGTGT
CCTATCTACCCCCACTTTTTTTTCTGGCTTTGCTGCCGTTATGTTTTCTA
TCTAAAAGCAAGAATGAAAAACCATGCAGCTTGCATTTAGTTTGTGCATT
TGCTTTGTGTATTATGCTAGTCTCTTCAAGCTGATATATGTGATGGAGCT
GAAAACATCACCTCTACTACCTCCCACTGCTCCAGGCACCGGAATGTACT
GCGAGTTTATTTCCCTGAAGCCCCCACTACCACATGCAGTGCTCCCCCAA
GAAACCTGAACCATCGGTCCTTTTACATTCCCCAAAAACCAAGAACGGTC
ACCCCCCGCTTTTAACGGTTGGGCCCCTTCTCCCCCCCTTCTTACACCGG
GAA
TTCTCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTCCACATGCAACA
ATTTCTCTCATCCTGTTTTACCTTAATGAGCCCTAGCAGCCAATCGCCTT
AGACTTCTGTGGCATTTAAGATATTCGTTAAGGCATTTCTTTAGGATCAG
TGTGTGTGTGAGAGAGGGAGAAGTGGCAGGAGTGGAGGAGAGACTCTGCC
TCTTCTTCCTATTTCACCTCCTGCCTTGCGTGTTTCCTCCCTTTTTTCCC
CTGTGTACGCCTGCCCCCTCTCCTTCTTTTTTTTCCTTATCTCCCCTTTC
CTCTCCTTATCCCTCCTCTTTCCCCTCCTCCTTCCCCCTTTCCTTCCCCC
TTCCCCCTCCTTTTATGTTTCCCCTCTTTCCTTTCTTCCCCCCCCCTTTT
TTCCTGTTTTTCTTTCTCCCCCCTTCCCCCTCCCTTCTCTTCCTCTCCCC
CTCCCCTTCCCCCCTCTTCCCCCCTCCCCCCCCTTCTCCCCCTTCTTCCC
CTCCCCCTTCTTCCGCCTTTCCGTCCTCCTTCCCCTTCTTTCCTCCTTTC
TTTTATTGTGTTGCCCCCCCCTCCTACCCCCCTTGCTCTTCCTTGTCCCT
TATTTTCCCCCACCCCTCCCTCTTCTTCCTCCCTCCCCCACTTTTTTTCT
CTTCCTCTCCCCCCCTCCTCCCCTTTTCCCTTTTTTTTTTTTTTTTTCCT
CCTTACCCCTTTTTTTTTTTCCCCTTTTTCTCTTTTCTTTCCTTCCCTTA
CCCCTCCTTTCTTCTCCTTTGCCTCTTCCCGCCACCCCGCCCCCTTCCTC
GCTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_n03.g1 MSMg01no391_n03.g1 CHROMAT_FILE:
MSMg01no391_n03.g1 PHD_FILE: MSMg01no391_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:09 2005
         (146 letters)



>mm_chr2_125224243_125224788
          Length = 546

 Score =  259 bits (134), Expect = 5e-74
 Identities = 143/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacctccacatgcaacaatttctctcatcctgttttaccttaatgagccctagcagcca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaacctccacatgcgacaatttctctcatcctgttttaccttaatgagccctagcagcca 287

                                                                       
Query: 61  atcgccttagacttctgtggcatttaagatattcgttaaggcatttctttaggatcagtg 120
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 286 atcgcctttgacttctgtggcagttaagatattcgttaaggcatttctttaggatcagtg 227

                                     
Query: 121 tgtgtgtgagagagggagaagtggca 146
           ||||||||||||||||||||||||||
Sbjct: 226 tgtgtgtgagagagggagaagtggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)