Query= MSMg01no392_a23.b1 MSMg01no392_a23.b1 CHROMAT_FILE:
MSMg01no392_a23.b1 PHD_FILE: MSMg01no392_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:28 2005
(338 letters)
>mm_chr2_28629077_28629814
Length = 738
Score = 627 bits (324), Expect = 0.0
Identities = 336/342 (98%), Gaps = 4/342 (1%)
Strand = Plus / Plus
Query: 1 aacatttaaatcctggaatattttgctgtaatgtgaaatctagaactgaattggcaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatttaaatcctggaatattttgctgtaatgtgaaatctagaactgaattggcaggtg 260
Query: 61 gttcatagtcctggctctcttggttttatctcaaggcttgttactgttcattccctgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gttcatagtcctggctctcttggttttatctcaaggcttgttactgttcattccctgcgc 320
Query: 121 cacgtgcctttagagaacaacagactgaagcccttggataaggacagggccaaagtaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgtgcctttagagaacaacagactgaagcccttggataaggacagggccaaagtaagg 380
Query: 181 atgctatcatccttaagagggcagtagtaagagcaaagaaaaattaaaatgcaaagtaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctatcatccttaagagggcagtagtaagagcaaagaaaaattaaaatgcaaagtaga 440
Query: 241 attgtttgtgcgaagcacatgtgcttgctctctctctctctctctctctctctctctctc 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcttgtgcgaagcacatgtgcttgctctctctctctctctctctctctctctctctc 500
Query: 301 tctctctctctctctctctctctctc----ctcattatcact 338
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tctctctctctctctctctctctctctctcctcattatcact 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space: 239841
Effective search space used: 239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_a23.g1 MSMg01no392_a23.g1 CHROMAT_FILE:
MSMg01no392_a23.g1 PHD_FILE: MSMg01no392_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:28 2005
(245 letters)
>mm_chr2_28853263_28853907
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 242/247 (97%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 1 acctgacacactcattaacgcacaagttgtgtgtgtgttac--gtgtgtgtgtgtgtgcg 58
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 521 acctgacacactcattaacgcacaagttgtgtgtgtgttacgtgtgtgtgtgtgtgtgtg 462
Query: 59 catgcgtgcgtgtatgctgcccagaattgtactgctgttactctctgtgtctccatggag 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatgcgtgcgtgtatgctgcccagaattgtactgctgttactctctgtgtctccatggag 402
Query: 119 ggaaggtctggtggggagtgtgtcctaaccatgtcacagccatattggtctggcctccga 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggaaggtctggtggggagtgtttcctaaccatgtcacagccatattggtctggcctccga 342
Query: 179 catccctgtgagctgctatgagcaggacacctgctcattgcctccctatatatgttatgc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 catccctgtgagctgctatgagcaggacacctgctcattgcctccctatatatgttatgc 282
Query: 239 gcctctt 245
|||||||
Sbjct: 281 gcctctt 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
