BAC Information

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BAC

Clone NameMSMg01-392C04
Chromosome2 (Build37)
Map Location 35,158,357 - 35,158,766
singlet/doubletsinglet
Overlap geneGsn
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14
Downstream geneStom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C04.T7 (MSMg01no392_c04.b1)MSMg01-392C04.TJ (MSMg01no392_c04.g1)
ACCAG493742AG493743
length799761
length of high quality
(start - end)
414 (48 - 461)237 (70 - 306)
definitionCHROMAT_FILE: MSMg01no392_c04.b1 PHD_FILE: MSMg01no392_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:34 2005CHROMAT_FILE: MSMg01no392_c04.g1 PHD_FILE: MSMg01no392_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCTGTGCACCCAGGACGGCATGTGTGATTCTGTTCCAGCAG
ACACTATGGTCTTGGTGCTGTGAATTACTCTATCACTTCCTTTGTTTTGA
ACATACAACTTTTGCTAAGGCAGCCCCAAATTCTGGAGACTTCTCCCTCA
TCACATGCATCCAAGAAACATGGGAATTAGCCAGACCCGCTCAGTCTCCA
AACTTTGTGCTCTCCATTTCTGAAGGGAAGAAGTTTGTCCTACTGCAGGG
TCTCCTGGCTATAAGGAGGGGTAGGGTTGTTTTTTCCTGGCCCCTGATTA
GTTGAGTGCTGCCTGTCCCACCCCACCTCCAGGTGATGCCTAAGTCTGGT
GCTCTGAACTCCAACGATGCCTTTGTGCTGAAAACCCCCTCCGCTGCCTA
CCTGTGGGTGGGCACAGGAGCCAGTGATGCGGAGAACACCGGCGCCCATC
AGCTTCTGAAGGTGCTTCGGTCCCACCATGTGCAGCTGGAACAACGCATT
GACCCACGTGCGCCGACCCACCCATTCCCACTGCCTGCAGCCCCCTCTCC
CAATTCCTTCCTCTGGAGCCCTTCACTTCCAGCGCATTGTATGGAATGAC
CGCCCATTATTCCTCGACTTTATTCATCCCCCCCCCATTTTTGACCAAAC
ATTCCACCTTATGACCCCCGTTTCCCCCCTCTTATTTCCCCCCCCACCAT
CCCCTCCTTCCTTCTCATCCCACGCCACCCCCTTTCCTCACACCGATCG
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGTGTAGCCCAGGCTGGCCTGGAACTCACT
CTGTATCTCACACTGTCTTGGAACTCTGGGAAGTCCTCCTGCCTAAGCCT
CCTGAGTGCTGGGATTCAAGTGAGCCACCATGCCTAGCTTGCTTCTAACT
GTGTTATTTGGAACATTTCTTTGCATATTTCTTCAAGGGAAGATATATCC
TTCTGGGAAGTGGTCTCTGTCTCTCTGTCTCATGGGTTACATTCCTAGAA
TGGCCTGGTTGAATCGTTCCTATCTAACGNGCCCCATCAATCTACTGTGT
TGTTTTGTACTCTCCCCTCCGGGGGGGGTGATGCTGCTTGTTTATGTGTT
GCTCCCCCCCCCTCATTCATTCTGTCCCGTTTACTGTTGCCTCCCTGTCG
CTTTTTCCCCTTTCACTCTTTCCCTTCCTCCCTTTTTCCCTATCCCCATC
TCCCATATTCTTTTTTTCTTCCCTTTTTTTCCATTCCCCTCCCCTCCTTC
TCCTATATTCCTCCTCCCTCTCTTTTTTCTTCCCCTTCTTTTTTTTTTTT
CCCTCTTTCTACCCTTCTCCCCCTTTTTTCCTTTCTTCCCTCCCCCCTAC
TCCCTCATTATTCCTCCCCTTTTTCCTCCCCCCCCCCCCCCCATTCCAAT
TCCTATTCCTACATTCCCTTCCCCCCCCTCTCCCCCCTTCTACCTCCTTT
TTTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c04.b1 MSMg01no392_c04.b1 CHROMAT_FILE:
MSMg01no392_c04.b1 PHD_FILE: MSMg01no392_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:34 2005
         (414 letters)



>mm_chr2_35158153_35158966
          Length = 814

 Score =  762 bits (394), Expect = 0.0
 Identities = 406/410 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgtgcacccaggacggcatgtgtgattctgttccagcagacactatggtc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctgtgcagccaggacggcatgtgtgattctgttccagcagacactatggtc 264

                                                                       
Query: 65  ttggtgctgtgaattactctatcacttcctttgttttgaacatacaacttttgctaaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggtgctgtgaattactctatcacttcctttgttttgaacatacaacttttgctaaggc 324

                                                                       
Query: 125 agccccaaattctggagacttctccctcatcacatgcatccaagaaacatgggaattagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccccaaattctggagacttctccctcatcacatgcatccaagaaacatgggaattagc 384

                                                                       
Query: 185 cagacccgctcagtctccaaactttgtgctctccatttctgaagggaagaagtttgtcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagacccgctcagtctccaaactttgtgctctccatttctgaagggaagaagtttgtcct 444

                                                                       
Query: 245 actgcagggtctcctggctataaggaggggtagggttgttttttcctggcccctgattag 304
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 actgcagagtctcctggctataaggaggggcagggttgttttttcctggcccctgattag 504

                                                                       
Query: 305 ttgagtgctgcctgtcccaccccacctccaggtgatgcctaagtctggtgctctgaactc 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgagtgctgcctgtcccactccacctccaggtgatgcctaagtctggtgctctgaactc 564

                                                             
Query: 365 caacgatgcctttgtgctgaaaaccccctccgctgcctacctgtgggtgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caacgatgcctttgtgctgaaaaccccctccgctgcctacctgtgggtgg 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)