Query= MSMg01no392_l04.b1 MSMg01no392_l04.b1 CHROMAT_FILE:
MSMg01no392_l04.b1 PHD_FILE: MSMg01no392_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:19 2005
(477 letters)
>mm_chr2_173498027_173498903
Length = 877
Score = 899 bits (465), Expect = 0.0
Identities = 471/473 (99%)
Strand = Plus / Plus
Query: 1 ttgtaagattgttcatatgcaaattgtctgttacttctggctctggctttgatagattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtaagattgttcatatgcaaattgtctgttacttctggctctggctttgatagattgc 260
Query: 61 attctttaacagctttaactcttctgtggacttctcccatcttgctagtttatcagcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctttaacagctttaactcttctgtggacttctcccatcttgctagtttatcagcata 320
Query: 121 aggctgccaggcttcctactgacaccagcttgcattttggatggttcttgcctttggtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctgccaggcttcctactgacaccagcttgcattttggatggttcttgcctttggtca 380
Query: 181 actgtagcatatctgatgtctttgcctttgtcttgatcagtgtatgaaagctcctactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtagcatatctgatgtctttgcctttgtcttgatcagtgtatgaaagctcctactct 440
Query: 241 tgatatcagtgttttcatcactgactttactcttttgttgcacattgtgctcgctaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatatcagtgttttcatcactgactttactcttttgttgcacattgtgctcgctaatct 500
Query: 301 tatgtcacccttgacacaggctagagtcatctgagaggagagaaccccggctgaaaatat 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tatgtcacccttgacacaggctagagtcatctgagaggagagaaccccggttgaaaatat 560
Query: 361 gccttcataagattgggctgtaggcaagcctgtagaatactttcttagtgattgatgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccttcataagattgggctgtaggcaagcctgtagaatactttcttagtgattgatgtgg 620
Query: 421 gaggaccctttgtatcaagggtggagtcattcctgggttctgtaaaaaaggta 473
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggaccctttgtatcatgggtggagtcattcctgggttctgtaaaaaaggta 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_l04.g1 MSMg01no392_l04.g1 CHROMAT_FILE:
MSMg01no392_l04.g1 PHD_FILE: MSMg01no392_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:19 2005
(393 letters)
>mm_chr2_173641462_173642252
Length = 791
Score = 692 bits (358), Expect = 0.0
Identities = 384/396 (96%), Gaps = 8/396 (2%)
Strand = Plus / Minus
Query: 1 cagtagctggtgttctttggatgggaaccttttgtttctgttgacctgtgtctttggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cagtagctggtgttctttggatgggaaccttttgtttctgttgacctgtgtctttggtga 532
Query: 61 tccttaattgggaattcacattctcttgattttcttggaaaatctcagactctaaaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tccttaattgggaattcacattctcttgattttcttggaaaatctcagactctaaaacag 472
Query: 121 caatgctttcctaaggggccatttatctttgcttcttccaggagccaaaaggcatgagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caatgctttcctaaggggccatttatctttgcttcttccaggagccaaaaggcatgagga 412
Query: 181 acctgagactaggctagccctgtccaccaccatcacaacatgggcaagaccagcatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acctgagactaggctagccctgtccaccaccatcacaacatgggcaagaccagcatttct 352
Query: 241 agtcacactcttttagg---ctctccgtgggtcccgtttcactagtctttgaggtcgagc 297
| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attcacactc----aggaggctctccgtgggtcccgtttcactagtctttgaggtcgagc 296
Query: 298 gtgtttagactttttgaaaaagagtcgtttagatcatgtctcaatgtggacaatggaatc 357
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtgtttagactgtttgaaaa-gagtcgtttagatcatgtctcaatgtggacaatggaatc 237
Query: 358 cttctaaatactcatgttacttttgcacagacagaa 393
||||||||||||||| ||||||||||| ||||||||
Sbjct: 236 cttctaaatactcatattacttttgcagagacagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 791
Length adjustment: 9
Effective length of query: 384
Effective length of database: 782
Effective search space: 300288
Effective search space used: 300288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
