BAC Information

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BAC

Clone NameMSMg01-392P06
Chromosome2 (Build37)
Map Location 142,904,515 - 142,904,924
singlet/doubletsinglet
Overlap geneOtor
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2
Downstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392P06.T7 (MSMg01no392_p06.b1)MSMg01-392P06.TJ (MSMg01no392_p06.g1)
ACCAG494367AG494368
length756779
length of high quality
(start - end)
240 (81 - 320)414 (75 - 488)
definitionCHROMAT_FILE: MSMg01no392_p06.b1 PHD_FILE: MSMg01no392_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:40 2005CHROMAT_FILE: MSMg01no392_p06.g1 PHD_FILE: MSMg01no392_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACACAGGA
TCCGCGGAATTCACAGTTCCAGCCTTACAGCCAAAAAGAGGAACTTTAGG
AAGGGGTAGGTGATCTATATCTTGATTGGTGGGTTCTATCTCTGAGGGTC
TGGGTATTGCTCTATTCAAACTAGCTATTCTTACTTCATGCCAGGGAGGG
GTAGCTCTTGACCTCTTGGCCACACACTTGGCTAACTGTCCTTTTAAAAG
CTGGGTAGTCCCTTTTACATAAACCTGTGGTTGTTCCAGTAACTGACTTC
CCCAGTTCTGAGAAGTAGAATTTTTTTCTTGGTCTCCTGAACTGCTAGTT
TGCAGTTCACCATGGAGTCAGTCTGGCTCAGGCCAATTTGCTCCTTTCAG
ATGTGACATGGGGCCAGACCCACCCGTCCAAAGAATTGTGCCCAGTGGCC
CCATCTTTTAGAGGCTTCACAATATCCTCATCAGAACCATTCATTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCAGCATCATCAGTTGGAG
TGTAAATCCTCAAACATGAGCTTGCGAAAGACATTTCAGACCTCCAGTTC
CTCCTACCTAGTCTTCCCTGACCACATCACCTTTTCCTGCCCCTTCCACA
ACCTCATCTTCTAGGCCCCCCCCAAGTTTCCCCTCCTCTAAAAACCTTCC
TATATTCCCTCACAGAATCCCCCTCTTAGCAGGAAGAATACCTTCCATAC
CCCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCCTAAGATTTCCTTGTCGCCCC
CCCCCCAACCCCCACCCCCGTTTGAAACCCAGCTGTGCTCTCCTTTCCTC
TCTCCTACCTTTCTTACACTTTGCCTTCTTACTCATAGGACATCTGGTCA
CTTCCCCCCCTTTTTTTTCTCTTCCAGATACTATTTCTCTGGCAAGAGCA
CAGGAAGATTACAATGCCCCAGACTGTAGGTTCATCGATGTCAAGAAAGG
GCAGCAGATCTATGTTTACTCTTTTCTGGTAACAGAAAACGGAGCTGGAG
AGTTTTGGGCTGGCAGTGTAAGACGAGACTGTTTTTAATACATACACACA
TACATACATACATACACACCCACATATATACATACATACATACATATGTA
TATATTCTTAATTGTATTACTCTTAATTTTTCCTGGCTTTCCTGTCCTCA
GTCTGTTTAATGTTTAACAGCAGCTGCAAAGATAATATGGACACCGCAAG
TGGAAACCCAAAAATTCCCATTCCTCTTCTAAAAGGGGCGCACTTCCCCT
CACAATTACCCGGTAATTCCCACCTGGAGCTTCTGTTTTCGGAAAAAAAA
AACCTGGCTGGGTTGATGTTTCTGCCTCGCCTACTTAAATTAAGCCCCCC
CCCCCAAATAGTTCAAAAAAATATTCTTCCATTTCTGCGCGGTCCGCCGC
TCTTTCTTATAACGTTGTTTTACCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_p06.g1 MSMg01no392_p06.g1 CHROMAT_FILE:
MSMg01no392_p06.g1 PHD_FILE: MSMg01no392_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:40 2005
         (414 letters)



>mm_chr2_142904307_142905120
          Length = 814

 Score =  681 bits (352), Expect = 0.0
 Identities = 397/422 (94%), Gaps = 20/422 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcctaagatttccttgtcgccccccccccaacccccacccccgtttgaaacccagct 60
           ||||||||||||||||||||||  |||||| ||      |||||||||||||||||||||
Sbjct: 209 atttcctaagatttccttgtcg--ccccccgca------acccccgtttgaaacccagct 260

                                                                       
Query: 61  gtgctctcctttcctctctcctacctttcttacactttgccttcttactcataggacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctctcctttcctctctcctacctttcttacactttgccttcttactcataggacatc 320

                                                                       
Query: 121 tggtcacttcccccccttttttttctcttccagatactatttctctggcaagagcacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtcacttcccccccttttttttctcttccagatactatttctctggcaagagcacagg 380

                                                                       
Query: 181 aagattacaatgccccagactgtaggttcatcgatgtcaagaaagggcagcagatctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagattacaatgccccagactgtaggttcatcgatgtcaagaaagggcagcagatctatg 440

                                                                       
Query: 241 tttactcttttc----tggtaacagaaaacggagctggagagttttgggctggcagtgta 296
           |||||||    |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttactc----caagctggtaacagaaaacggagctggagagttttgggctggcagtgta 496

                                                                       
Query: 297 agacgagactgtttttaatacataca----cacatacatacatacatacacacccacata 352
           ||||||||||||||||||||||||||    |||||||||||||||||||| ||  |||||
Sbjct: 497 agacgagactgtttttaatacatacatacacacatacatacatacatacatacatacata 556

                                                                       
Query: 353 tatacatacatacatacatatgtatatattcttaattgtattactcttaatttttcctgg 412
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catacatacatacatacatatgtatatattcttaattgtattactcttaatttttcctgg 616

             
Query: 413 ct 414
           ||
Sbjct: 617 ct 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)