BAC Information

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BAC

Clone NameMSMg01-393F23
Chromosome2 (Build37)
Map Location 140,983,758 - 141,148,814
singlet/doubletdoublet
Overlap genenone
Upstream geneEsf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393F23.T7 (MSMg01no393_f23.b1)MSMg01-393F23.TJ (MSMg01no393_f23.g1)
ACCAG494686AG494687
length767766
length of high quality
(start - end)		464 (43 - 506)440 (69 - 508)
definitionCHROMAT_FILE: MSMg01no393_f23.b1 PHD_FILE: MSMg01no393_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:17 2005CHROMAT_FILE: MSMg01no393_f23.g1 PHD_FILE: MSMg01no393_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,148,355 - 141,148,814)(140,983,758 - 140,984,197)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGATTCTCTATTAAGCCTATGCTAGTCTTGATCAACTATCCTCCTATT
TCAACCTCCTTGGTGCAGAAACCACTGAACCATCTGTTTTTCTGGTTCAG
AAAGTAGTTCTTGTGTATATCCAGTAATACCTGGACACAGTTTTGCTTTG
GAGACACAAATAGTAAATAATGGTCAGAGATGTGGCTACATATCATTCTG
AACTCCACTTCACCCACTGCAGACAAAAGCATGGAGCTGCAAGTGTTTAA
AGCGAGACCAGGAGACTCTGATCTCCAGGCATTTGTAATGAAGTATTTAG
CACTTTGGAATATTAGGCTTACAAAATTCTGGGGTCTGAGCCCCAGGCCT
GTATAATCTGGCCATACACCCAAAACATCAGCCATCAGGAAATTATAGGC
AAGAGGAGTGTAAGTTCAAAGCCTTCCTCAAATACATAGAGTATTAAGTC
AGTCTAGGTTATATAAGACTTCATATCAAAAAGAAGAGAGGGACAAAGGA
AGGAAAAAATGGAGAGAAGAAANNTATAGAATGATAGCACAGCAAAAATG
AGCTGTCTGCTGGTGGGAGGACTATTCTGAAGCAGGGANTGAAAAAGCTT
AAGGAAATAAAGCTGGCTTGGGCTGGGTCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCGGGGGGGGGGGGGGGGGGGNNNNNNNNGGGGGGNNGNNNNNN
NTNTCTTTGTTTTTTNT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCCTGGATTTGCCTCGGTTAATGTCACCTAT
TTTGATGGTTATTTTCAATTTGTTTTACAATGTCATTTGTATTACTTGCG
TGATTCTTTTGCTCTGTTCCTTTTTTTTTTCCTTTCATTTTCTTTTCTTA
CAGAATTTACTGTTCATTTTCAAATTACTCCAGACCCTAATAGTCTTATT
TCGCTCTGGGCAGAATTTGTGTATCTATTGAATTGCATTCTGTTTTGTTG
AATTTCCTTCAGTGAGTGTCTCTCCAAGAGCTTCTTTCAGTGGCAACGCA
TTAAACGACTTCTTCAGGGCCTTTGGGCTGCGTTTGTCATGTACCCATAA
TCAACCCGGTACTACGCCAAATGTCCTAATTAATTCACTGTGTGCTCCCA
CTTAAATATTTATGAATGTGACTAGTTGAAATGCTGATATGCACCTTATT
ACTGGCCTTANNAGAAATGTTTTTTTTTTCCTGGTAGTGGTATCAATTTT
AAGAATTCAGATTTGAAACGTTTGGTTTAGCAATTTCAGTGGGCGCATCA
TGTTAATGGAGTCCTGGAAACTGCTGGCGTTTAAATGAATTAAATATGAA
AGCCACCCCGGTTATTTAGGCCCTTAGGATAAAAAAATAGGAAAGCCTGT
GCTTAACAAAAATCAATCCTGCCCCCCAAGGGCCCTTTTTTTTCAAAATT
TTTTAATAGCGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_f23.b1 MSMg01no393_f23.b1 CHROMAT_FILE:
MSMg01no393_f23.b1 PHD_FILE: MSMg01no393_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:17 2005
         (464 letters)



>mm_chr2_141148151_141149014
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 459/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagattctctattaagcctatgctagtcttgatcaactatcctcctatttcaacc 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 664 gaattcagattctctattaagcctatgctagtcttgatccactatcctcctatttcaacc 605

                                                                       
Query: 65  tccttggtgcagaaaccactgaaccatctgtttttctggttcagaaagtagttcttgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tccttggtgcagaaaccactgaaccatctgtttttctggttcagaaagtagttcttgtgt 545

                                                                       
Query: 125 atatccagtaatacctggacacagttttgctttggagacacaaatagtaaataatggtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atatccagtaatacctggacacagttttgctttggagacacaaatagtaaataatggtca 485

                                                                       
Query: 185 gagatgtggctacatatcattctgaactccacttcacccactgcagacaaaagcatggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gagatgtggctacatatcattctgaactccacttcacccactgcagacaaaagcatggag 425

                                                                       
Query: 245 ctgcaagtgtttaaagcgagaccaggagactctgatctccaggcatttgtaatgaagtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctgcaagtgtttaaagcgagaccaggagactctgatctccaggcatttgtaatgaagtat 365

                                                                       
Query: 305 ttagcactttggaatattaggcttacaaaattctggggtctgagccccaggcctgtataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttagcactttggaatattaggcttacaaaattctggggtctgagccccaggcctgtataa 305

                                                                       
Query: 365 tctggccatacacccaaaacatcagccatcaggaaattataggcaagaggagtgtaagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctggccatacacccaaaacatcagccatcaggaaattataggcaagaggagtgtaagtt 245

                                                   
Query: 425 caaagccttcctcaaatacatagagtattaagtcagtcta 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caaagccttcctcaaatacatagagtattaagtcagtcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_f23.g1 MSMg01no393_f23.g1 CHROMAT_FILE:
MSMg01no393_f23.g1 PHD_FILE: MSMg01no393_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:17 2005
         (440 letters)



>mm_chr2_140983558_140984397
          Length = 840

 Score =  843 bits (436), Expect = 0.0
 Identities = 439/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctggatttgcctcggttaatgtcacctattttgatggttattttcaatttgttttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctggatttgcctcggttaatgtcacctattttgatggttattttcaatttgttttac 260

                                                                       
Query: 61  aatgtcatttgtattacttgcgtgattcttttgctctgttccttttttttttcctttcat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtcatttgtattacttgcgtgatacttttgctctgttccttttttttttcctttcat 320

                                                                       
Query: 121 tttcttttcttacagaatttactgttcattttcaaattactccagaccctaatagtctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttttcttacagaatttactgttcattttcaaattactccagaccctaatagtctta 380

                                                                       
Query: 181 tttcgctctgggcagaatttgtgtatctattgaattgcattctgttttgttgaatttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcgctctgggcagaatttgtgtatctattgaattgcattctgttttgttgaatttcct 440

                                                                       
Query: 241 tcagtgagtgtctctccaagagcttctttcagtggcaacgcattaaacgacttcttcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgagtgtctctccaagagcttctttcagtggcaacgcattaaacgacttcttcagg 500

                                                                       
Query: 301 gcctttgggctgcgtttgtcatgtacccataatcaacccggtactacgccaaatgtccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctttgggctgcgtttgtcatgtacccataatcaacccggtactacgccaaatgtccta 560

                                                                       
Query: 361 attaattcactgtgtgctcccacttaaatatttatgaatgtgactagttgaaatgctgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaattcactgtgtgctcccacttaaatatttatgaatgtgactagttgaaatgctgat 620

                               
Query: 421 atgcaccttattactggcct 440
           ||||||||||||||||||||
Sbjct: 621 atgcaccttattactggcct 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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