BAC Information

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BAC

Clone NameMSMg01-393O12
Chromosome2 (Build37)
Map Location 96,197,998 - 96,198,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393O12.T7 (MSMg01no393_o12.b1)MSMg01-393O12.TJ (MSMg01no393_o12.g1)
ACCAG495089AG495090
length786790
length of high quality
(start - end)
523 (31 - 553)338 (65 - 402)
definitionCHROMAT_FILE: MSMg01no393_o12.b1 PHD_FILE: MSMg01no393_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:04 2005CHROMAT_FILE: MSMg01no393_o12.g1 PHD_FILE: MSMg01no393_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCCACA
TAATTCCCGAGACATTGAAAGTTATGGGCACAGGGGAAAGATCCCTGAAT
AGAACAGCAATGGCTTGTGCTGTAAAATCAAGAATTAACAAATGGGACCT
CATAAAATTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAAGACAA
AAAAAGGCCACCAACAGATTGGGAAAAGATCTTTACCAATCCTAAATCTG
ATAGGGGGGCTAATATTCAATGAATATAAAGAATTCAAGAAGTTGGACTC
CAGAAAACTAGATAACCCTATTTAAAAATGTGGTACAGAGCTAAACAAAG
AATTCTCAACTGAGGAATACCAAATGGCCGAGAAGCACCTAAAGAAATGC
TCAACTTCCTTAGTCATCAGGGAAATGCAAATCAAAAAAACCACGAGATT
CTACCACACACCAGTCAGAATGGCTAAGATTAAAAACTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTAG
GACTGCAAGTTGTTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAG
AAAATTGGACATAGTTCTACCAGAAGATCCAGGAGTACCCCTTCTGGGCA
TATACCCCTAAGCCTGCTCCCACATATATTAAAGAAACCATGCTCTACTA
TGTTTCTTATACAAACTTTGGTTTTTATTTTTAACCGGAGCTTTTTAAAA
AACCCCAATGTTCCTCTCCCCAAAGAAAAGGAATCA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGGTGGCTCGTCCAAAATCAGACTCTTGTATTACA
TCATTTAAGGCTCAAGAAACATTACAGAACATGAGGGAAGAAAATGTAAA
TGCTTGAAGATAGAACTAATGGTTGAGATATATCTATATGGCATGGCAAA
GCCATTTCCATCACCATTCCAGGTCAACACCATCTGCCAGCAAAGGCCCT
CACAAGACTTGTACTGTCCGCTGTAAGTCATGGGTCCTCATTTAGGACCA
ATGCTTCTAAACAATTCTAGTGAAGGGAGAGGCTTTGTCTTTAGTTGTGT
GCTCACTGTACAAGGAGCCCATCTGGCTCCAGTAGACAGTTCTGACTAAA
CTCACGAGAAAGCAAAGCAAAAAGAAGTGAATGCAGTAGTGGAGTTTATA
TGAAGAACCAGGAGCAGGTGGAGGGAAGGAATGCCGATAGAACAATCCCT
TTTCTTTCTCTTCTCCTTTCCTCTTATCTTCCTCTTTCTTTCTTTTTGAT
CCTTCTCCCTTTTTCCCTTCTTCCCCTCTCTTCTTTTCTCTTCTTTCCCT
TTCCGCTTCTTTCCTTTCCTCCATCTTTCCTCTTCTCCCGTTCTCTTCTT
TTTCTCCACTTCTTTTTATTTCTTCTACGCCTTTTCCCTTTTCCCATTTC
TCACGCCTCCCCACGCCCACCCCCACTTAGGTATGTANATTCTACCCTTT
TTCTCTTCTCTTTTTTCGCCTCTTTACCTTTTTTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_o12.g1 MSMg01no393_o12.g1 CHROMAT_FILE:
MSMg01no393_o12.g1 PHD_FILE: MSMg01no393_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:04 2005
         (338 letters)



>mm_chr2_96197798_96198535
          Length = 738

 Score =  615 bits (318), Expect = e-180
 Identities = 333/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtggctcgtccaaaatcagactcttgtattacatcatttaaggctcaagaaacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atggtggctcgtccaaaatcagactcttgtattacatcatttaaggctcaagaaacatta 479

                                                                       
Query: 61  cagaacatgagggaagaaaatgtaaatgcttgaagatagaactaatggttgagatatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 478 cagaacatgagggaagaaaatgtaaatgcttgaagatagaactaatggttgagatctatc 419

                                                                       
Query: 121 tatatggcatggcaaagccatttccatcaccattccaggtcaacaccatctgccagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatatggcatggcaaagccatttccatcaccattccaggtcaacaccatctgccagcaaa 359

                                                                       
Query: 181 ggccctcacaagacttgtactgtccgctgtaagtcatgggtcctcatttaggaccaatgc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 358 ggccctcacaagacttgtactgtcagctgtaagtcatgggtcctcatttaggaccaatgc 299

                                                                       
Query: 241 ttctaaacaattctagtgaagggagaggctttgtctttagttgtgtgctcactgtacaag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 298 ttctaaacaattctagtgaagggagaggctttgtctttagttgtgtgctcactggagaag 239

                                                 
Query: 301 gagcccatctggctccagtagacagttctgactaaact 338
           ||||||||||| ||||||||||||||||||||||||||
Sbjct: 238 gagcccatctgactccagtagacagttctgactaaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)