BAC Information

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BAC

Clone NameMSMg01-394B05
Chromosome2 (Build37)
Map Location 90,745,633 - 90,746,093
singlet/doubletsinglet
Overlap geneKbtbd4
Upstream geneOlfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3
Downstream genePtpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394B05.T7 (MSMg01no394_b05.b1)MSMg01-394B05.TJ (MSMg01no394_b05.g1)
ACCAG495217AG495218
length743760
length of high quality
(start - end)
439 (53 - 491)461 (84 - 544)
definitionCHROMAT_FILE: MSMg01no394_b05.b1 PHD_FILE: MSMg01no394_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:19 2005CHROMAT_FILE: MSMg01no394_b05.g1 PHD_FILE: MSMg01no394_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACAGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGACTGCCAGGGCTACAATAGAGAGAACCTGTCTCA
AAACACCAAGATAAATAATAAAAATAATAATTTTTCTTCTTGTTTTCTAC
CAATAGTTTTCAAAGCTTAATGTAAAAAATCCACTAAAAATATTCTCCCA
AAAGGGACTGGAGAAAAGGCTGCGATTAAGAGTGATTACAGCTCTTGCAG
AGGCCCTGGATTAGATTCCGACACTCACACCAGGTGGCTCACAACTTCTT
ATAACTCCAGTTATAAGGGGGATCCGATGCCCTGTGGCTTCCGTGGGCAC
CCACATAAACACCATGCACATAAACTCACACACACACACACACACATATG
CACACACATACATACACACACGTGAACATACATTTAATAATTGTGCAGGG
AACATACAAAAACAATTGTAAAATTATCTAAATAATGAAAAAAAAGCCTT
AAGATTCTTTTTTTCTATGAGGAAATGTTAATCAAACAACATTGGTCCAG
CATACACATATATTGAAGCACTGAGTTCAACGGTATCTCAGCACAAAAGG
AGTTGAGAAAGGGTTAATTTTCAAACCATCTGGGATTCGGGTGAAAACTT
GGTCAAAAAAAGTGGAAGAGGCAAGGCTAAGTTTCCTCCTCCCTTTTCTC
TCTTACCTTTTTTTCCCCCTTATCTTCTCCCTTTTTCCCTCCC
NNNNNTTCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGAGGAGAGGCCCC
ACTGCAGGAAAACTGGAGGAATGGCATAGGCCACATTGGCAAGACCAGGA
ATAAGGCCATTCTGGACCCACTTTGCTCCAGTGTCTCCCTTCTCCCTGTA
TTGACTTGGACAGTTGGATTCATGGACTGTGTCTGTGAATTACCCAAATA
CTTAGGGTGATATTGCTTTGCAGATAGTTGGCAAAGAGAGAAGTTGGCTA
CCATGGAGTCACCAGAGGAGCCTGGAGCATCCATGGATGAAAACTACTTT
GTGAACTATACTTTCAAAGACCGGTCTCACTCAGGCCGAGTGGCTCAGGG
CATCATGAAACTGTGTTTAGAGGAGGAGCTCTTTGCTGATGTCACCATTT
CAGTGGAAGGCCGAGAGTTTCAGCTGCACCGGCTGGTCCTGTCAGCTCAG
AGCTGCTTCTTCCGATCCATGTTCACATCCAACCTGAAGGAGGCTCACAA
CCGGGTGATTGTGCTGCAGGATGTCAGCGAATCTGTTTTTCAGCTCCTAG
NTGACTATATATACCATGGGACTGTGAAACTTCCAGCTGATGAGCTGCCG
GAAATTTACGAGGTGTCAGAAATGTATCAGCTGAAATCTCTCTTTGAGGA
GGGTTCCCGGTTTCTGGCCCGCGCCGGACAGGGGGGTAAATGCCCGCGAG
ATAAGGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_b05.g1 MSMg01no394_b05.g1 CHROMAT_FILE:
MSMg01no394_b05.g1 PHD_FILE: MSMg01no394_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:19 2005
         (461 letters)



>mm_chr2_90745433_90746293
          Length = 861

 Score =  884 bits (457), Expect = 0.0
 Identities = 460/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggaggagaggccccactgcaggaaaactggaggaatggcataggccacattggcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggaggagaggccccactgcaggaaaactggaggaatggcataggccacattggcaag 260

                                                                       
Query: 61  accaggaataaggccattctggacccactttgctccagtgtctcccttctccctgtattg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 accaggaataaggccattctggacccactttgctccagtgtctcccttctccctgtcttg 320

                                                                       
Query: 121 acttggacagttggattcatggactgtgtctgtgaattacccaaatacttagggtgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttggacagttggattcatggactgtgtctgtgaattacccaaatacttagggtgatat 380

                                                                       
Query: 181 tgctttgcagatagttggcaaagagagaagttggctaccatggagtcaccagaggagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctttgcagatagttggcaaagagagaagttggctaccatggagtcaccagaggagcct 440

                                                                       
Query: 241 ggagcatccatggatgaaaactactttgtgaactatactttcaaagaccggtctcactca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcatccatggatgaaaactactttgtgaactatactttcaaagaccggtctcactca 500

                                                                       
Query: 301 ggccgagtggctcagggcatcatgaaactgtgtttagaggaggagctctttgctgatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccgagtggctcagggcatcatgaaactgtgtttagaggaggagctctttgctgatgtc 560

                                                                       
Query: 361 accatttcagtggaaggccgagagtttcagctgcaccggctggtcctgtcagctcagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatttcagtggaaggccgagagtttcagctgcaccggctggtcctgtcagctcagagc 620

                                                    
Query: 421 tgcttcttccgatccatgttcacatccaacctgaaggaggc 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcttcttccgatccatgttcacatccaacctgaaggaggc 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)