BAC Information

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BAC

Clone NameMSMg01-394H23
Chromosome2 (Build37)
Map Location 96,465,380 - 96,549,398
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394H23.T7 (MSMg01no394_h23.b1)MSMg01-394H23.TJ (MSMg01no394_h23.g1)
ACCAG495540AG495541
length812795
length of high quality
(start - end)		406 (51 - 456)392 (80 - 471)
definitionCHROMAT_FILE: MSMg01no394_h23.b1 PHD_FILE: MSMg01no394_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:54 2005CHROMAT_FILE: MSMg01no394_h23.g1 PHD_FILE: MSMg01no394_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,465,380 - 96,465,782)(96,549,007 - 96,549,398)
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGCTGACCGCTTTCTCAGCAAGGAAAAACTAGCTCCCTTT
TAACAGGAAGGTCTGTTCCTGTGGAGTTAATCAGAGGAAGAACTTATTAG
ATCAGCAGTTATATCTGAACGTTCCAAACCACAACATAATATTTTGTTAA
GAGTCATGTGTGTAAACCGTTTTAGTGTTAGCTGACAGTGTACTTATTTG
CATTAGTCTTGGTAAGTGGAGAGGAGGAGGATGGTTCTGAAGGTTTCTAC
CTGAGTAGCGATGCACTATTCCAGTTTTTCTCATCGTTTAAATCTCTGTT
CTGTACCACTTAAAAGCTATACTTTATATTAGTAAAATGGAAAATAGTCA
ATGTAGAGAGCCAGAGAGCTGAGCTTTTAAGAACACTAGCTGCTTTTATA
GTAGATCTGGCTTGAGTCCCATTACTTTCAGGACTCCTTGTCCCTGTGCA
TAATTTCCGTTATATCGGATCGTCTTTTGGCATCAACTGGATGATGGCCC
TTTACTTTTGGACTTCCCCTTTTCTTCTTTACATACAAATTTTTTTTTTT
AAAATCACTGCCCATCCACTGTTGGTTGGCTCTTCAAGCCCCCAAACTCC
GGTTTCCCCTCATAAACCAAAACTCCCTCCATCCATTCCCCTCTTCTACT
TATACATTATTATCTCCCCGTCTGCTCCCGTATCTTCCCTCTACTCTCAA
CAAATCCTTCTCCTTTTTCCCTTATCTCCTTACATCAACTTCTCCATTTT
TCCTCTTTCCCG

NNNCCAATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAACAGGTTTACTTCC
CACACACACTGTTGTTAACATTCTCTTCTTGTGTATATGTGTACATATAT
TTCATCTTCCTTTGCATTTTGCAGAAAATAAAATGTAGAGATAACGCCCC
AGGTCTTCTCCATTGTTTTTCTTTCCTTTATCCTGACTATTGTACTAAAT
GGTCTGTCCCTCACAGAAAAGTTTACTTTAAACTCTGTGCTAAAGTGAAT
TTTGTTCTGATGTAACTTTACAATTTCATGATCAAAACTTTGGCAGCAAA
ATCTAAAAATCTTTTTTTCTTTTAAAGATCTACTTACAAAAAGCAAATTT
ACTCTTGGCAAGCCAAAGAAATGAACGAGTGAATGAATTTTAATTTGAGT
AAATGAGCAAAATGTCTTGGGAGATCTGCNAAAGGAAATATTTGAAGTAG
TATTTTCAGTTTAATTTTAATTCATTTTATTTATAATTTTTTTTACTCAG
GAATAANAATTTTGACGCCCTCCTAAAATACTGGGGACAAAAATTTGTTG
TGCAAACTATGAAAATGGTTGTATGAACAGCCTATTTTTTTACCAGTTGG
AACCAAGCCAAAACATTTTGGGGAAAGAGGATATTACTTTTAAAAATGCC
CCCGCCAATTTGGATTGGGTGAAAAACCCCCCCAAGGCGAATTTTTCTTG
CGAAAAAAGGGAGGGGGGAGGGCGCGCGCTATTTTTTTGTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_h23.b1 MSMg01no394_h23.b1 CHROMAT_FILE:
MSMg01no394_h23.b1 PHD_FILE: MSMg01no394_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:54 2005
         (406 letters)



>mm_chr2_96465177_96465982
          Length = 806

 Score =  748 bits (387), Expect = 0.0
 Identities = 399/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagctgaccgctttctcagcaaggaaaaactagctcccttttaacaggaaggtc 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagctgacagttttctcagcaaggaaaaactagctcccttttaacaggaaggtc 263

                                                                       
Query: 64  tgttcctgtggagttaatcagaggaagaacttattagatcagcagttatatctgaacgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 tgttcctgtggagttaatcagaggaagaacttattagatcagcagttatatcttaacgtt 323

                                                                       
Query: 124 ccaaaccacaacataatattttgttaagagtcatgtgtgtaaaccgttttagtgttagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaaaccacaacataatattttgttaagagtcatgtgtgtaaaccgttttagtgttagct 383

                                                                       
Query: 184 gacagtgtacttatttgcattagtcttggtaagtggagaggaggaggatggttctgaagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagtgtacttatttgcattagtcttggtaagtggagaggaggaggatggttctgaagg 443

                                                                       
Query: 244 tttctacctgagtagcgatgcactattccagtttttctcatcgtttaaatctctgttctg 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 tttctacctgagtagcgatgcactattccagtttttctcattgtttaaatctctgttctg 503

                                                                       
Query: 304 taccacttaaaagctatactttatattagtaaaatggaaaatagtcaatgtagagagcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taccacttaaaagctatactttatattagtaaaatggaaaatagtcaatgtagagagcca 563

                                                      
Query: 364 gagagctgagcttttaagaacactagctgcttttatagtagat 406
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagagctgagcttttaagaacactagctgcttttatagtagat 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_h23.g1 MSMg01no394_h23.g1 CHROMAT_FILE:
MSMg01no394_h23.g1 PHD_FILE: MSMg01no394_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:54 2005
         (392 letters)



>mm_chr2_96548807_96549598
          Length = 792

 Score =  758 bits (392), Expect = 0.0
 Identities = 392/392 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaaacaggtttacttcccacacacactgttgttaacattctcttcttgtgtatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 caggaaaacaggtttacttcccacacacactgttgttaacattctcttcttgtgtatatg 533

                                                                       
Query: 61  tgtacatatatttcatcttcctttgcattttgcagaaaataaaatgtagagataacgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgtacatatatttcatcttcctttgcattttgcagaaaataaaatgtagagataacgccc 473

                                                                       
Query: 121 caggtcttctccattgtttttctttcctttatcctgactattgtactaaatggtctgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caggtcttctccattgtttttctttcctttatcctgactattgtactaaatggtctgtcc 413

                                                                       
Query: 181 ctcacagaaaagtttactttaaactctgtgctaaagtgaattttgttctgatgtaacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctcacagaaaagtttactttaaactctgtgctaaagtgaattttgttctgatgtaacttt 353

                                                                       
Query: 241 acaatttcatgatcaaaactttggcagcaaaatctaaaaatctttttttcttttaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acaatttcatgatcaaaactttggcagcaaaatctaaaaatctttttttcttttaaagat 293

                                                                       
Query: 301 ctacttacaaaaagcaaatttactcttggcaagccaaagaaatgaacgagtgaatgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctacttacaaaaagcaaatttactcttggcaagccaaagaaatgaacgagtgaatgaatt 233

                                           
Query: 361 ttaatttgagtaaatgagcaaaatgtcttggg 392
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttaatttgagtaaatgagcaaaatgtcttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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