BAC Information

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BAC

Clone NameMSMg01-394O08
Chromosome2 (Build37)
Map Location 37,120,235 - 37,120,577
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366
Downstream geneOlfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394O08.T7 (MSMg01no394_o08.b1)MSMg01-394O08.TJ (MSMg01no394_o08.g1)
ACCAG495844AG495845
length802782
length of high quality
(start - end)
339 (74 - 412)194 (124 - 317)
definitionCHROMAT_FILE: MSMg01no394_o08.b1 PHD_FILE: MSMg01no394_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:27 2005CHROMAT_FILE: MSMg01no394_o08.g1 PHD_FILE: MSMg01no394_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTCAXXXXXXXXXXXXXXXXXXXGAATACTATTTCTAGAGAGGCGC
GGAATTCTTTAATTTCTTGAATATTAGCCTCATTGGATATACAATTGTTA
TAGATCTTTTCCTAATTTGTTGGTTTTCGTTTTGTCCTATTGACAGTGTC
CTTTGCTTTACAGGACTTTGTAATTTTATGAACCCCAATTGTCAATTTTT
TTGATTTAAGTTTTATTGCATTATGATGAGAAAAGATACATAATTTCAAT
TTATCTGAATTTGTTAACATTTAAAGACATATTTTGAGTAAATAGACTTA
GATCACATTCTTCTTTCTCCTTGTACCCCAACTCCTCCTGGAGAGCCCAT
GCTTCAAAACCTGGAATACCTGTAATTTTTTTTATCATATTCTTTAAAAT
TTATAAACTATTGCCCCACCAACAATGAGTATCATAAAAGTTGTTTGATA
TAAAAGAACAATCTATTAACAGTTTTATGTACATGTCTGCCTATCGTATT
ACTGAAAACACCTAATCTTTTCTCTATACCTTTTAACTCCTTTCCATATC
TTTACCTTGTTGCATATTTCCCATATATCATTTCTAACTTTTTACCGCTC
CTTCCCCTATTCATACCTTTTTCCCTCCTTTTTCCCTTCTCCTTACCTAC
ATCCTTCCCTTTTTTTCTTTCCGGTTTCCCCTTCCCCCCCTCCCACCTTC
TTCTCTCTCTCCCCTCTTTCTTCCCTTTTCCTCCTACATCCTTCTATCTC
TTCCTCCCCTTTCTTTCTCCTCCCCTTTTTTTCTCCTCTCCCTTTCCTTC
TC
NTTTCCGATGATACTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTGCAAAATTCTTTGGNTTCTCCATCTATGGTGAT
TGAGAGTTTGGCCGGGTATTGCAGCCTGGGCTGGCATTTGTGTTCTCTTA
GTGTCTGTATAACATCTGTCCAGGCTCTTCTGGCTTTCATAGTGTTTGGT
GAAAAGTCTGGTGTAATTCTGATAGGCCTGCCTTTATATGTTACTTGACC
TTTCTCCCTTACTGCTTTTAATATTCTCTCCTTATTTTGTGCATTTGTTA
TTCTGATTATTATGTGTCGTCATGTTTTTCTTTTCTGATCCAGTCTATTT
GGAGTTCTGTATGCTTCTTGTATGTTCATGGGCATGTCATTCTTTATGTT
TGCGATGTTTTCTCCCACCCCCCCCCCAANATATTTGCTGGCCCTTTAAG
TTGAAAATCTTCATTCTCATCAACTCCTATTATTCGTACGTTTGGTCTTC
TCTTTGTGTCCTATACTTCCTGTATGTCTTGTTACCTACCATCTTTTCTT
CACCTTGTTCCCCTTCCTCCCTGCCCTTTCCTTATCCCTATCACTTTCCC
TTTCTTATCCTGCCTCTATCTTTCTATTCTCTTATCAATCCCGCACACAT
TACCCCCCAATTTATTTTCTCCTCCTTACTCTCTTCCTGCCTATTTTCTT
CTCTTCCCATATCACACCTTCCATATCTTTTAAACTCCCACCCTTTTTCC
ACTATTATCTCCTCTCTTCTCCCTTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_o08.b1 MSMg01no394_o08.b1 CHROMAT_FILE:
MSMg01no394_o08.b1 PHD_FILE: MSMg01no394_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:27 2005
         (339 letters)



>mm_chr2_37119876_37120615
          Length = 740

 Score =  567 bits (293), Expect = e-166
 Identities = 330/343 (96%), Gaps = 4/343 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagcctc--attggatatacaattgttatagatcttttcctaatttgttggttttcgtt 58
           ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttagcctcttattggatataaaattgttatagatcttttcctaatttgttggttttcgtt 643

                                                                       
Query: 59  ttgtcctattgacagtgtcctttgctttacaggactttgtaattttatgaaccccaattg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttgtcctattgacagtgtcctttgctttacaggactttgtaattttatgaaccccaattg 583

                                                                       
Query: 119 tcaa-tttttttgatttaagttttattgcattatgatgagaaaagatacataatttcaat 177
           |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 582 tcaattttttttgatttaagttttattgcattatgatgattaaagatacataatttcaat 523

                                                                       
Query: 178 ttatctgaatttgttaacatttaaagacatattttgagtaaatagacttagatcacattc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttatctgaatttgttaacatttaaagacatattttgagtaaatagacttagatcacattc 463

                                                                       
Query: 238 ttctttctcc-ttgtaccccaactcctcctggagagcccatgcttcaaaacctggaatac 296
           ||||||| || |||||  ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 462 ttctttcccctttgtaagccaactcctcctggagagcccctgcttcaaaacctggaatac 403

                                                      
Query: 297 ctgtaattttttttatcatattctttaaaatttataaactatt 339
           |||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 402 ctgtcatttttttaatcatattctttaaaatttataaactatt 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space:   241230
Effective search space used:   241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)