BAC Information

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BAC

Clone NameMSMg01-395J23
Chromosome2 (Build37)
Map Location 21,265,501 - 21,265,745
singlet/doubletsinglet
Overlap genenone
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneGpr158, LOC637235, Myo3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395J23.T7 (MSMg01no395_j23.b1)MSMg01-395J23.TJ (MSMg01no395_j23.g1)
ACCAG496397AG496398
length754750
length of high quality
(start - end)
341 (73 - 413)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no395_j23.b1 PHD_FILE: MSMg01no395_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:31 2005CHROMAT_FILE: MSMg01no395_j23.g1 PHD_FILE: MSMg01no395_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATGATCCAATAAGATTGACAAACCTTTATCCAAATTT
ACTAAAAGGCAATCAGAATCTCTAAACTAACAAAATTAAAAGTAAAAGGG
GAATCTAACAACAGACACCCAGGAAATCTGGAGAGCAATAAGAGTATACT
TTAAAATCTTATACTTCACAAAATTTTCTCAATACATACTACTTACTGAA
GTTTAATCAAAATCACATAAGCAATGTAAACAGATTTAAAACACCTAATG
AAATAGAAGCAGTAATTAAATGTCTTCTAACAAAAATCTGAACAGGTGTT
ATCAAGTGGGTATTGGGATGGAAAAGGGGGATAAGGGAAGGAATACTGGG
ACAAACATAATCAAAATTAAAACGCATTTGAGGGACAATAATAAAACCTA
ATACTGTAGAAGCCTTCTAAAATATATACATACACAAAGGTTTTTTTTTT
TTAATAAATCCTCCTATTATAGGGTAGACCGGGGTACTACTGGTCTTCTT
TTGGCCACCAATAAAATTTCCTTTGTCAGAATTGTTTTTATTTGAAACTC
CCATGAAATCTTCCCGTATTCCTCTTTTCACCCGCGTTTTTAACAAGATT
TTATTGTTTTCTTTCAACCATTAGCAAGGGTTTAGGTTTGCCGAAACCCC
CTTTTATTTTTTTTACATTACTTCTTCCAAGGCATCTCTCCTTTCTTTCT
CCCC
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGGCCTCTGTGATCTTGCTGT
GTGCCCCATGCCAGGAGCTTAGCTGTCCTCAGTGGGGACACAGCTTCTCA
TTTCCTCGGCCTTCTGTTCACTGCCTGAGCATCAGATAGAGGACAATGTT
GCTCCACTGGGAAAGTGGGTCAGCCAGACGGTCCAGGAGGAGACACGTGG
AGGCCCAGAAATAGTGCTCTGGAGATAGACTACCCAAGTTTAGACACAGG
CGAGAAAGGGAAGGAGTTCTGTCTCGAGAAAGCAAATTTAAGCTTTGGCC
TGAAATGGACCAGTGTTGGGGACTCAGCAAAGTCTTAGGCACATTGATGA
TGGTTGATAGCTATCATTAATGAAAAGATCTAGTTTAAAGAGAGTACAGA
ACCAAAACCTTTCATGATCTCAACACTTCCCTAGAGCCTTGGCAGAGCAC
CTGCCACAGGTGTATTGCTGGACTGCAAGACTGAGCTCCTTGCAAGAAGT
GAGACTCACCCAGGGGATGAAAATATTTGGCAGGGGCGAAAGCATTTGGG
GAAACAAAAGGAAAAGTTGTTAAATAATTGCCCAAATTTCTCCCCCCTCC
GTCCAGAAACGGGGGATTTAATTGTTAAAAGAAAACTTGTAAGGCACCAC
CCGGCCCATAAATTAAGGGGGGGGGGAATATTTTCTCCCTCCCCCCCCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_j23.g1 MSMg01no395_j23.g1 CHROMAT_FILE:
MSMg01no395_j23.g1 PHD_FILE: MSMg01no395_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:31 2005
         (245 letters)



>mm_chr2_21265301_21265945
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagggcctctgtgatcttgctgtgtgccccatgccaggagcttagctgtcctcagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagggcctctgtgatcttgctgtgtgccccatgccaggagcttagctgtcctcagtgg 260

                                                                       
Query: 61  ggacacagcttctcatttcctcggccttctgttcactgcctgagcatcagatagaggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacacagcttctcatttcctcggccttctgttcactgcctgagcatcagatagaggaca 320

                                                                       
Query: 121 atgttgctccactgggaaagtgggtcagccagacggtccaggaggagacacgtggaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttgctccactgggaaagtgggtcagccagacggtccaggaggagacacgtggaggcc 380

                                                                       
Query: 181 cagaaatagtgctctggagatagactacccaagtttagacacaggcgagaaagggaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaatagtgctctggagatagactacccaagtttagacacaggcgagaaagggaagga 440

                
Query: 241 gttct 245
           |||||
Sbjct: 441 gttct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)