BAC Information

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BAC

Clone NameMSMg01-395O24
Chromosome2 (Build37)
Map Location 81,192,514 - 81,192,953
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395O24.T7 (MSMg01no395_o24.b1)MSMg01-395O24.TJ (MSMg01no395_o24.g1)
ACCAG496634AG496635
length786864
length of high quality
(start - end)
447 (49 - 495)65 (91 - 155)
definitionCHROMAT_FILE: MSMg01no395_o24.b1 PHD_FILE: MSMg01no395_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:56 2005CHROMAT_FILE: MSMg01no395_o24.g1 PHD_FILE: MSMg01no395_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCTAGTTAACCTAGCATGCAGCAATATTTTAGGAAACTGA
AGTATCTCATAGGTAGTATCACTGGGACTAAGCCTTGAAGCTTATACACA
GTTATTGGTGTCTTCCTCACTGTCCTGGGCTGTTGTGATTTGAGCTGCCT
TTGCTTCAAGCTTTATCCATGGTGAACCCAGATGTTAGTTACCCTTTGAT
ATTTCCACCATGCTGAGCTGAAACTCCAAGAAATAGTGAGCCAAAATAAA
TATACTTAACCTTTTTTCCCTCAGGCATTTTGTCAGAGCACTAAGGATAA
TAACTGATACAGAAGCTATGACCTATAGACTGTTAAGACTCTTAGAGTAC
TATTGTAATACTTGAACGACATAGCCTAAAATTGGTATGCATAACGTCGT
GGGATTTCTAGATAACGATGTTCAATAAATAGCTGTGAGTCTCAAGGTTA
AAGTGGTGACCCTTTTCCAGTCATTCATTCACAGTAAAAAGACTTAGTTA
AAAAGATATTTAGGAATTCTCAAAGGGGGAGAGTATCACAAACCCTTGTG
GCTAGGATTCACCTTAAAGGGAATATAACCCCTTGTAAAATTTGACCGCA
AAAGGTTTCTGAATACCCACCGCCGTCAAACGCACAATAATTGGGTCTTT
GTAAACCCTCTTTTATAGGGGTTTTTGTTGGGTAATCACTTCATGCCACA
TTTCTTTTTATGGGCCACTTTTTGTTACCATATTTG
NNCCGATGCAGTGGGAGGCCCGGCGGCCGCCTGGCCTCCCGACCCGGGTG
ACCTATAGAAGGATCCAAGGAACTCCGTGGGCTGTATCTTGGGTATTCTG
TACTTTATTTATTTATTTATTTACCCATTTATTTATTTATTTATTTATTT
ATATTTTTGGGCNNNNNNGNCCCGCCCCCGCCGGNTCCNCCCCCGCCNGC
CCCCCNCCGGCCCCGCCGCCCCTCCCCCCCGGCCNCCCCCCTCCGCCCCC
CGCCTTCCTTCCCCCCTGCNCGCGCCGCCCCGCCCTCCCCTCCGCCGCCC
CCCCCCCCCCCGCGCGCGCGCCCCCCCTTTTTCCCCCCCGCCCCGCCGCC
CCCCCCCCCCGCCCCCCCCCCCCCCCCCCGTCCCCCCCGCGCGTGCCCCC
CCGCGCCGTTCCGCCCCGCCCCCCCCCCCCCCCCCCCCTTTCCCTCCCCC
CCCCTCCCCCGCCCCCCTCCCCCGCCCCCTGGTCCCCCGGCCCCCCCCCC
CCCCCGCCCCCCCCCCCCCCCCCCCCCCCGTTGCCTTCCCCCCCCCCCCC
CCCCGCCCCCCCTCCCGCCCCTCCCCCCCGCCCCCCCCCCCTCCCCCCCG
CTCCCCCCCCGTCCGCCCCCCCCCCCCCGCCGGCCCCCCCCCCCCTTCCT
CCGCCCCCCCCCTCCTCCCCCTCCCGTCCCCCTCCCCCCGGTCCCGCCTC
TCCGCCCCCCGCCCCCCCCCTCCGCCCTCCGCCCTCCGCTCTCGCCCCCC
CGCCTCCGCCCCGGTCCCCCGCCCTCCCCCGGCCCGCCCCGCGTGCCGCT
CGCCCCCCCGCTTCCCCCCGCCCGCCCCCCGTCCCCCCGNCCTCTTCCCG
CCGCCTTCCCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_o24.b1 MSMg01no395_o24.b1 CHROMAT_FILE:
MSMg01no395_o24.b1 PHD_FILE: MSMg01no395_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:56 2005
         (447 letters)



>mm_chr2_81192310_81193156
          Length = 847

 Score =  719 bits (372), Expect = 0.0
 Identities = 425/444 (95%), Gaps = 5/444 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatctagttaacctagcatgcagcaatattttaggaaactgaagtatctcatag 64
           |||||||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattctatctagagaacctatcatgcagcaatattttaggaaaccgaagtatctcatag 264

                                                                       
Query: 65  gtagtatcactgggactaagccttgaagcttatacacagttattggtgtcttcctcactg 124
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 gtagtatcactgggaataagccttgaaacttatacacagttattggtgtcttcctcactg 324

                                                                       
Query: 125 tcctgggctgttgtgatttgagctgcctttgcttcaagctttatccatggtgaacccaga 184
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tcctggtctgttgtgatttgagctgcctttgcttcaagctttgtccatggtgaacccaga 384

                                                                       
Query: 185 tgttagttaccctttgatatttccaccatgctgagctgaaactccaagaaatagtgagcc 244
           |   | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 t---a-ttaccctttgacatttccaccatgctgagctgaaactccaagaaatagtgagcc 440

                                                                       
Query: 245 aaaataaatatacttaacctttttt-ccctcaggcattttgtcagagcactaaggataat 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataaatatacttaacctttttttccctcaggcattttgtcagagcactaaggataat 500

                                                                       
Query: 304 aactgatacagaagctatgacctatagactgttaagactcttagagtactattgtaatac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgatacagaagctatgacctatagactgttaagactcttagagtactattgtaatac 560

                                                                       
Query: 364 ttgaacgacatagcctaaaattggtatgcataacgtcgtgggatttctagataacgatgt 423
           ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 561 ttgaatgacatagtctaaaattggtatgcataacgttgtgggatttctagataaagatgt 620

                                   
Query: 424 tcaataaatagctgtgagtctcaa 447
           ||||||||||||||| ||||||||
Sbjct: 621 tcaataaatagctgtaagtctcaa 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)