BAC Information

Click to search

BAC

Clone NameMSMg01-396J18
Chromosome2 (Build37)
Map Location 86,519,597 - 86,520,012
singlet/doubletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086
Downstream geneOlfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396J18.T7 (MSMg01no396_j18.b1)MSMg01-396J18.TJ (MSMg01no396_j18.g1)
ACCAG497146AG497147
length759762
length of high quality
(start - end)		435 (38 - 472)416 (67 - 482)
definitionCHROMAT_FILE: MSMg01no396_j18.b1 PHD_FILE: MSMg01no396_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:47 2005CHROMAT_FILE: MSMg01no396_j18.g1 PHD_FILE: MSMg01no396_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
AGATCTTCCTAGCTGTTTAAGTGTCAAGGACCTGGCACAGATTCTTTATT
GCTGCATCAATCTTAAATACAATGTGAGAGCTGTTGTTTACCTCTGTGAT
ATGTGTGCCACTAATGCACCACTAGGGGTGTTGATGTTTTTCTTGTTGTT
GCTGCTGTTGTTTTCCATTCTGTTTCTTCCTATGGTTCATAGATATCATA
GATGTGTAGCACTGCTCATTGCTGTCTTTCATTAAAGATTTTATAGTGCC
TTTTAGTACAATGTATTCTAGTTCATAGGGAGGAATCATCTTGTCAGTTT
TGACTCAGGGTCCTCTGGAACCTGGGTCTGAAATCCACAGTGTCTCCAAA
AATATGAACTTTGATTTCTTAGGCAAAATAGTGAAAATAGTAATAGCCTT
TATTGTTCTGAGGGGGTTTCTCAGACAACACTGATTTACAAGCAAAATTA
GCACTTCTTATGCCAAATGTTGTTTTTGTTAAAAACCCTTGATTGGTGGA
AGAAGCCTTTTTTTCCACCCATAAAAAATAATTTTTAAAAATTTGTTAAT
ACCCCTACCCTTACTTGTTTTACAAAACCTCCCCCCACACCCTCACATTC
TTTTTTTTTCTACATTTTCTGTCCCTTCTCCCCTTCCCTTCTATTCCCTT
ATCTCCTCCCCCCCCCTTCTTCTTCTTATTCTCTTTCCTTCCTTTTTTTT
TCCCCATCN

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATGTGCCCTAAGCAAATAGTTAAATAATATATT
AGTAAGAGGGCAATATTTAGAATCCATTTTTAACATTAAGGGTAGTGTTG
AATTTCATCATTCCCAGAGACGTAACTTGGTGCAGAGACTCTATCACAGT
GTATATGCTTTCAAGTTTGTTATGTAAACACTGCAGCCAGTTATACTTGC
TCCTTGTAAAATTGGATTCCTAAGTGCTTGCCCCAAGGAATTTAAGCAAA
TTCTCTTTCTTACTATGAGTATTTTCAAATTGTTAAGCCTGGAAATTTTA
AATAAAATAAGTAGTTATTTCATTTGATTACTGGATTGCATATTTATGAT
GCACATTTTAAATTTTATTGTTTTCTCAATTGCATAAAAATGAGTAAACA
CTCTACAACAAACACTCATTTTTGGTATGCACACTTTGTTTCAATATTTT
ATTTCTTTTTTTTTTCCATTTATGTTAAGAAACCTGGCTTGTTATTCATA
GAGACATGTTAATAGATTTTTTTTCTTAAGAGAACAGAAAATGCATAAAA
GCTACCTTAGATAGTTTAAAAAAACTTTCCTGAATTTCATAAGGTAGGGT
TTACCTTCAACCCTTTTTCCAAAGTGCTGAAATTTGTTCTTTACCTAAAA
AAACAAAAGAAGGTGTGAGCTCTGCTAGCTAACCCGCAATTTCTCCGGGT
TTAACTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_j18.g1 MSMg01no396_j18.g1 CHROMAT_FILE:
MSMg01no396_j18.g1 PHD_FILE: MSMg01no396_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:47 2005
         (416 letters)



>mm_chr2_86519397_86520212
          Length = 816

 Score =  712 bits (368), Expect = 0.0
 Identities = 404/416 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgccctaagcaaatagttaaataatatattagtaagagggcaatatttagaatcca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgccctaagcaaataattaaataatatattagtaagagggcaatatttagaatcca 260

                                                                       
Query: 61  tttttaacattaagggtagtgttgaatttcatcattcccagagacgtaacttggtgcaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tttttaacattaagggtagtgttgaatttcatcattcccagagacgtaacttagtgcaga 320

                                                                       
Query: 121 gactctatcacagtgtatatgctttcaagtttgttatgtaaacactgcagccagttatac 180
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gactctatcactgtgtatatgctttcaagtttgttatgtaaacactgaagccagttatac 380

                                                                       
Query: 181 ttgctccttgtaaaattggattcctaagtgcttgccccaaggaatttaagcaaattctct 240
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 381 ttgctctttgtaaaattggattcccaagtgcttgccccaaggaatttaagcaaatcctct 440

                                                                       
Query: 241 ttcttactatgagtattttcaaattgttaagcctggaaattttaaataaaataagtagtt 300
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttactatgaatattttcaaatagttaagcctggaaattttaaataaaataagtagtt 500

                                                                       
Query: 301 atttcatttgattactggattgcatatttatgatgcacattttaaattttattgttttct 360
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 501 atttcatttgattactggattgcatagttatgatgcacatttttaattttattgttttct 560

                                                                   
Query: 361 caattgcataaaaatgagtaaacactctacaacaaacactcatttttggtatgcac 416
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 caattgcataaaaatgagtaaacactctacaacaaacacccatttttggtatgcac 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |