BAC Information

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BAC

Clone NameMSMg01-397G18
Chromosome2 (Build37)
Map Location 84,330,397 - 84,330,763
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi
Downstream geneLOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397G18.T7 (MSMg01no397_g18.b1)MSMg01-397G18.TJ (MSMg01no397_g18.g1)
ACCAG497766AG497767
length7971,097
length of high quality
(start - end)
368 (36 - 403)---
definitionCHROMAT_FILE: MSMg01no397_g18.b1 PHD_FILE: MSMg01no397_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:51 2005CHROMAT_FILE: MSMg01no397_g18.g1 PHD_FILE: MSMg01no397_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACACATCCGCGGAATTCTTTT
ACTTTCCCAATTTTTTTTTTAGGATAGCTTACGAGGCAATGGGTTTCATC
GTGGCATCTTTTTACATACTTGTTACTATACTGTCATTCATTTCCCACTC
TCATCTCACTATCATTACCCACTTTTCCCTTCAGCTTGTTCTATTTAAAA
TATTTTTAAGCTCAAGGACAATTTTATTAGAGTTTAAAAGACAAATGATA
GGAGAAGCAATGTGTAAATCTCAGCAGCAGTCTGGAGGAGAAAGAGAGAG
AGCTTGCCCTTTGATTTAGGTATGGAAGTCATCAAGTAATCACAGGATCA
TAGGGCAAGGGGGATTGAATGGATAGAAGGACTGAGGAATCCCAAAGAAC
AACAACAAACAAACGTAGGCTCTTGCCAGCCAGTAAAGAAGAATAGAGCA
AGAAAAACTGGACCTTTCTGAGTCAGGTTTCAGAAAGGCAGGCAGACTAA
AGAGAACTTCCTGTAGCCTCTGGAGCTAAACTAAGAACAGGTAGGAAAGG
AAAGGCCCACCATTTCCTTTTACCCTTTAAAGGGAGAATTATTTCCCCCA
TCTTTTTCCTATTTACCCCAAAAATCTTTCCATTCCCACTTTTAACCTCC
CGCGCCAAACCGCGTCTTCATTTTTCTAAGCCTTTCTTTACCCCTTACAC
TATTTTACCAACGTTTTAACAAATAAATCTCCGTTTTTTCTCTAAACCCT
CACTCCAAATAACTTTTCCCCATTCACCTATACTTCCATCGCTTTTG
CCCCCAAACCACAAAANNNNNNNNCCCNGGTGCGNGCACCCGCANGGNGA
ANNNNNNCNNNNTTGCCAAACNACCCAGCCGGGGNANNNGAGGGGGACAG
AACCACCCCCCCAACCGACCCGAAGGAAATTTTTTACCCCCACCACCTAC
CAGCGCNAAAAACCCGCCCCCGCCGCACCGGAGAACCGTTCATTACGGCG
GACGGGGCGTCCCCGTACCCCTTCCATCCCCCATTGCCGCCCACATCCGC
GCTNACTCTCTCCGCGCACACCATGCCCTCCCACCCCGCACATCCACTTC
CCGCATCACCTTTTTTTTCTGGTCACCAGAGCACGCACACGCGTCCGACC
GACTGCTCTCCCGCCACACTACCCGCCGCGCCACACAAGAGACACCACTC
CTTTTTTTTTTTCCCGCACACCGCCGCACACCAAACCACCGCGCAGACCC
CGACCATCCACCCCCCGCACCAAACGCCACTCCAAGGAAAGACCCAACCC
ACCGACCGGCCACGACCTTCCCCCCCCCCCCCCCTCCCTCTCCTCACGTC
CCTCCTTAGTATATCTCCCGCCGACTTCACATCCTTCTCTCTCACCCCCA
CCCCCTCTACTCACCCACTCACACCCCCCGCCTCCTCTCATCACTCTCGC
TCCACTTACCGCCCCGCCCCGCCCTATCCCTCTACCTCTCTCTATATTCG
TCCGGCCCGTCCTCACACCTTCCGTCGACTCTCCTACTGTTCATTCTCTA
CTCCCTCACACGCACCCTCTACACCACTTGCCCGGCATTCTTCCACCCCT
ACCTACACCCTCCTTCTCCCCTCGTACACACTACCTCGCCATTCCCTTCT
ACATCCGCCCCATCTTATCGACACGCCCCTCTTCTTCACCCCATCATAAA
CTGCTCTCGCCTGCTGCCGCACCACCGCCACCTCTCAGCCTACACCCCCT
CCCTACCCCGTCATCATACACTCCGCCATCTACATATCCTCCTCGTAGTA
CTCCATCACCCCACTGATCTTCCTCTCTACTACCACGCCTTCTATACACA
TCTTTCGCATCTATCTCGCGCATTAATCCTACCGCNCATAATCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_g18.b1 MSMg01no397_g18.b1 CHROMAT_FILE:
MSMg01no397_g18.b1 PHD_FILE: MSMg01no397_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:51 2005
         (368 letters)



>mm_chr2_84330196_84330963
          Length = 768

 Score =  632 bits (327), Expect = 0.0
 Identities = 356/373 (95%), Gaps = 15/373 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcttttactttcccaatt---ttttttttaggatagcttacgaggcaatgggttt 61
           ||||||||||| |||||   |||   ||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttttgctttc---attaatttttttttaggatagcttacgaggcaatgggttt 258

                                                                       
Query: 62  catcgtggcatctttttacatacttgttactatactgtcattcatttcccactctcatct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catcgtggcatctttttacatacttgttactatactgtcattcatttcccactctcatct 318

                                                                       
Query: 122 cactatcattacccacttttcccttcagcttgttctatttaaaatatttttaagctcaag 181
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cactat---tacccacttttcccttcagcttgttctatttaaaatatttttaagctcaag 375

                                                                       
Query: 182 gacaattttattagagtttaaaagacaaatgataggagaagcaatgtgtaaatctcagca 241
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 376 gacaattttattagagtttaaaagacaaacgataggagaagcaatgtgtaaatctcagca 435

                                                                       
Query: 242 gcag------tctggaggagaaagagagagagcttgccctttgatttaggtatggaagtc 295
           ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcagcagcagtctggaggagaaagagagagagcttgccctttgatttaggtatggaagtc 495

                                                                       
Query: 296 atcaagtaatcacaggatcatagggcaagggggattgaatggatagaaggactgaggaat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcaagtaatcacaggatcatagggcaagggggattgaatggatagaaggactgaggaat 555

                        
Query: 356 cccaaagaacaac 368
           |||||||||||||
Sbjct: 556 cccaaagaacaac 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)