BAC Information

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BAC

Clone NameMSMg01-397L14
Chromosome2 (Build37)
Map Location 42,453,558 - 42,453,734
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397L14.T7 (MSMg01no397_l14.b1)MSMg01-397L14.TJ (MSMg01no397_l14.g1)
ACCAG497996AG497997
length845864
length of high quality
(start - end)
179 (131 - 309)44 (73 - 116)
definitionCHROMAT_FILE: MSMg01no397_l14.b1 PHD_FILE: MSMg01no397_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:15 2005CHROMAT_FILE: MSMg01no397_l14.g1 PHD_FILE: MSMg01no397_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAANGAANACCAAATTCCGCACTGCGCGGAANCANN
ANATTTACATATACACCGAGNACATCTTTTGTTTCAATCTTACATTAAAA
CCTTGGACTTATAGCCCATTAAGGAATAGGTCTGCTGAACAAATTTTATC
AAATGCAAAAATGAACTAAGAATTTTTCATTATCTTTTATTTTCAAAAGA
TATTTGAATTCTGACAGCACCAAAACATTAGTAATTTTCCATAATTATTT
CCCAGATCCTATTAATATCAAGAATATCTGTACCTAAATTTAGTACAGTT
TTGCCCTATTTGTAATAATAAGATCTTATAACAAACATGTGCCTATTTTT
ATTCTACTTACACCAGGAGAAAGGCCATGAATAATGTCACATATCATTCT
AGAACCCCCCACCACCTATGTCTTATTGATGTTTTTTGTCCCCCCCTTTA
CCCACCCTAATTTCTCACTCCCCTTTTTCCCTCTCCTCTTGCTACTACTC
CATTTCCTTCCTTTATCTTATTATCCTTCCTACCCCCCTCGCCCTCTTTC
TACCCTTCTTACTCATTTCCTTCTCCTATCCTCCCCCTTTCCACTTAATT
CCACTATTCTTCTTCCTTCTCGCATCTTACCATCTTCCTAACCTCTCCCA
CTTTTTCCTTTTTTGTATTTTATCCCCCTCCCCCCCTTACATTCTCTCCT
TCCCTTCTACCTTCCTTTCCCTTCCCCCCTCCCTCTTTTCTTTTCTCCTT
ACATTCACTCCCGCCCCTTTCTCCCTCTTTCCCAATTATTCTCTTGCCGC
TCACGATATACCCTTTATTCCCTCTTCTCTTTTCCCCCCTCTCCG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCAGACATTCATGCAAAATGTGTACCAGCAAAAACCCC
TTAATTTGCTAACAATGCTGCCGGTTGTAAAATTAAAGTTTACTGTGGTA
TTATGTGTCAGACCAAGGTAATTGATGAAAACTATTTTAGCTTAAGGTAA
TATGATAACCATGTCTGAATTCTGCCACCAAAGATGAATACGAACAGCCT
TTTTTTTACTGGGAAATGCATTCTTCCCACTGACGGAAGCAGACATTGGG
TAACGACACCCGCCCTTTTAACTCGTTTTCCCGACAACGCTTAACATCAA
CCCTCGATTTTCACCCCCCATACCTTTATATTCCATCCCCATCCCTTTTT
TTCCTTTTTTATCCCCCCCCACCCCGTCCCCTTGTCATTCCACCTACCTT
CCCCTCTTTCTCTTTCCTTTTTATTCCTCCCCTCCTTCCCCTCTCTTTCC
TCCAATTCCTCCCCCCCTTCTTTTCTCCCCCCTTCCTTTCTTTTTTCCTT
TCTCCTTTCCTCCCCTTACCTTCCCTTCCTTCTTCTTCTTTATTCTCCCC
CCTCTCATTTATTTCCTCTTTTTCTTCACTCCCCTTCTCTCCCCCCCCTT
ATTCTTCCCACTTTCTCCCCCCTTTATATTCCCATCTCTTCCATTTCCTC
CACCTCTTCCTCCCTCTCTCTTCTTTTCTCCTCTCTCTCCCCGCTATCCT
TCCGTCTCTCTCTTCTACTTTCTTTTTTTGTACCCCTCTTTCCCCCCCTC
TCTTTCCCTTTCTTTACCTCATCTCACTTTTCCTTTATCTCTCACTTCTT
TCTCCCCTCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_l14.b1 MSMg01no397_l14.b1 CHROMAT_FILE:
MSMg01no397_l14.b1 PHD_FILE: MSMg01no397_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:15 2005
         (179 letters)



>mm_chr2_42453358_42453935
          Length = 578

 Score =  306 bits (158), Expect = 7e-88
 Identities = 173/178 (97%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctgaacaaattttatcaaatgcaaaaatgaactaagaatttttcattatcttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctgctgaacaaattttatcaaatgcaaaaatgaactaagaatttttcattatcttttat 318

                                                                       
Query: 61  tttcaaaagatatttgaattctgacagcaccaaaacattagtaattttccataattattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |
Sbjct: 317 tttcaaaagatatttgaattctgacagcaccaaaacattagtaattttccataactaact 258

                                                                     
Query: 121 cccagatcctattaatatcaagaatatctgtacctaaatttagtacagttttgcccta 178
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 257 cccagatcctattaatatcaagaatatctgtacctaaatttagtaga-ttttgcccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 578
Length adjustment: 8
Effective length of query: 171
Effective length of database: 570
Effective search space:    97470
Effective search space used:    97470
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)