BAC Information

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BAC

Clone NameMSMg01-398A14
Chromosome2 (Build37)
Map Location 42,361,339 - 42,361,478
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398A14.T7 (MSMg01no398_a14.b1)MSMg01-398A14.TJ (MSMg01no398_a14.g1)
ACCAG498235AG498236
length743754
length of high quality
(start - end)
140 (132 - 271)491 (72 - 562)
definitionCHROMAT_FILE: MSMg01no398_a14.b1 PHD_FILE: MSMg01no398_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:40 2005CHROMAT_FILE: MSMg01no398_a14.g1 PHD_FILE: MSMg01no398_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAAATTTGCGGTCGCTAAACGACTCTTTATTCCCAGAGCATCCGCGGA
ACTCAATATTTTCAATGGATGTCTTTACTGGTGACTAAATGTATTAGAGG
CTTCCCAGAATTCTACCAAAGTATCAAGGAAATACAAAAACCTGAACCAA
AACTATTGTTCTTAAAGATAAAAACTTAGGAAATATGCTTTAATATATAA
ATATGTCACTTTTTGCACTATTGTAATTTGTGTTCTTTTATTTAAACATC
AACCAGAGATTATATTATTTTAGCAGGTAACTAAGAGTAATAATCAATTT
ATTAGTCGTAAGTATTTTTATCATCAACGGATTTATATATGGATTTGATT
TTGTCAATTATGAGTTCACATATTCCCTTATATACTAATATTGCATGATA
CTTTAAAATCTCTGAAAACACAACTTTTCTCAAAATAGCAAGAATTAAAT
TTTATTCCATTTTCTACTGGCATATTGTAATAGAGATAATAATATGCTGA
AATAATTTATTACTTGCTGTAATTGCATACATTCTGCGTATCATTATCTG
CATATCCTCTGCATCCGCCCATATGATACTGTCATCCACCGCTTATGTAT
ATGACCAGTTATTCCCCAGCTGTTGCAAAACTTTGCCTAGGCCACTTACC
CTTTATGACGAATATCCTTCTACTGCCCTAACCTTTTCCCTGTTTTTGCC
GCGTCTCGTTCTTTTTTCTCCCCCCCCTTCCCATCTCCCCTTA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAGAAAGACAGCAAGGAAGAATAGTAGG
AGTAAGAATAGTGGATGACACCACAAGAAAACCCTCAGAATTAACTAAGC
AGGACAAACACAGTCTTTATATATATATATATATATATATTCTCAAGGCT
TAGTTTTACTATAGATTTCTACCAGATTTTCAAAGAACAGTTAATGCCAA
TACCACTCAAAATTTTCAGCAACTAAAAACAGAAGAAACATTCATTTTAT
AAGGCCAGATTCACACTGACTGTGACACAAATACATATAAAGACCAAAGA
AAGAAAGAGAATTAAAGACCAATTAACCTTGTAAACATAGATGTAAAAAT
ACTAAACAAAATACTTGCAAATCAAATCTAAGAAGATATTGAAAAGATCA
TCCACCATGATTGAGTAAGCTTCACTTTAAAGTTTTAGGTAAGATTCAAC
ATCTCGAAATCAATACATATATTACAATGTACAGACTGAAGGACATTTTA
TAAAAAAAAAAAAATAAAATAAAAATCCATGATCACCACACAAGGTGCAG
AAAAGAAATTTGACAAAATGCAACACTGCTTCAGGATGAAGTCTTAGAGC
AATTAGGAATAAAAGGTCTTTTATTATTGCTCAACATCATAAAAGCAGTT
TACAGCAAGTCTATAGCTTCTCATCCAATTTAGTGGAAAGCAACTCCCCT
ACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_a14.b1 MSMg01no398_a14.b1 CHROMAT_FILE:
MSMg01no398_a14.b1 PHD_FILE: MSMg01no398_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:40 2005
         (140 letters)



>mm_chr2_42361139_42361678
          Length = 540

 Score =  271 bits (140), Expect = 1e-77
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaaaaacctgaaccaaaactattgttcttaaagataaaaacttaggaaatatgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacaaaaacctgaaccaaaactattgttcttaaagataaaaacttaggaaatatgcttt 260

                                                                       
Query: 61  aatatataaatatgtcactttttgcactattgtaatttgtgttcttttatttaaacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatataaatatgtcactttttgcactattgtaatttgtgttcttttatttaaacatca 320

                               
Query: 121 accagagattatattatttt 140
           ||||||||||||||||||||
Sbjct: 321 accagagattatattatttt 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)