BAC Information

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BAC

Clone NameMSMg01-399F08
Chromosome2 (Build37)
Map Location 27,568,954 - 27,569,193
singlet/doubletsinglet
Overlap geneRxra
Upstream geneLOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
Downstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399F08.T7 (MSMg01no399_f08.b1)MSMg01-399F08.TJ (MSMg01no399_f08.g1)
ACCAG499221AG499222
length742771
length of high quality
(start - end)
316 (49 - 364)240 (82 - 321)
definitionCHROMAT_FILE: MSMg01no399_f08.b1 PHD_FILE: MSMg01no399_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:19 2005CHROMAT_FILE: MSMg01no399_f08.g1 PHD_FILE: MSMg01no399_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAT
CCGCGGAATTCTTTTGTTACATTTTTCTGTGAAGTTGTAACAAACTATGA
CCATTAAAAACTGACAAGGTGTACCAATACCATCTAGGGTCGTCTACTGT
CTGTTGGGTCCTTCTTAACATCATGTGTCCTTTCACCGGTGTCCCCTGCA
GTGAAATGTTCCTTCACATGTCTGCCTTATCAAAACATTTTCTCATCTAC
GTCTGATTCAGAAAAATACTCCTTCATGTGTCTGTCCCAACAAAACACCA
TATGACACAACTAACGGACTTTATTAAAGAAACCTTTAAGTTTCCACTCC
AGGCAGGTATTGCAGAGACGAGATGCTAAGACTCAGAGAGATGACATGAC
TTGAGAGCTGGTCATTAACACACCCGGTCTTTGGGTCCACTCCTCACCTG
GTCTCTTACACTGCAGGTACTGGACCCTAGACAACGTTCCTGTCCCTGTC
CTCTGTCCCTGGCCTGTATTGTATAGGATTTGTTCTCAGTGTATGAACTG
CTACCTCTCATCCATTCTCCTCTTGCCCAGCCCTTCTTGGTTTTCTACCC
ACTAGCTGCTTGTCATGTTGTCTCGTGAATACGTGTCTCCCACCTGTCTT
ACCTACCGTTTGTCCCATACTCATTTATACTTCCCTTTTCCCCTCGACTA
CTCCACCCCTCTTTTTTATCCTCGCTCCCCCTCTCGCATATG
NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGTCTTGAGGCCCCAA
CAATAGGGGCAGGGCCCCACCAACAACTGATACCATGTGGTAGCCAACCT
CGCCCATGTTCCGTTTTCAACTCCAGAACAGATATGCCACCCTGATAATC
TGACAGGTTTCCAGCCTAGCCATGTTCTGATAGCCTGAGTTAGAGGTGAT
GTCTCTCCTACTGTCAAACCCCCAACCCAGATGACAACAGAACTCTGTAA
TGGAGCACCCAGAGCCACCATGTTTTTCACTGCCACCCGTCCAGTCTCTG
AGGTCCAAATGTGGTTATGCCTATGGCCCAGTGACAGCATGCTATTGTCC
CTGGTCCAGGTCCTGCTTCTCCCCCCCCCCTACTTGCAAGTACTTCCGTC
CAGGTGTCCTCCATCCCAGTATCCTATCATCATCCGGATAATTCTCCGGA
GACTAATAAGGTAATCTACTCCTCTCGGCTCCCCGACGTCCTTTGTCTTT
TCCCCCTATACTTACCTTTATACTTTTATTCTCTCTCCTTCTACTTGTTC
CTCCCCTCTATCTCCTGTCTATCCTGGATCTTTGTCTTTATTATTCGTTT
TCTCCCCCAATCCTTGTCCCTATCGGTAAGTGGGTCGGCCTTTTTATTCT
ATCTTACTCACCCTATTGTCTTCCAATTTCCCCTGTTTCTTATCACTACT
TCTTCTTCCTCCCTCCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_f08.g1 MSMg01no399_f08.g1 CHROMAT_FILE:
MSMg01no399_f08.g1 PHD_FILE: MSMg01no399_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:19 2005
         (240 letters)



>mm_chr2_27568754_27569393
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagtcttgaggccccaacaataggggcagggccccaccaacaactgataccatgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacagtcttgaggccccaacaataggggcagggccccaccaacaactgataccatgtggt 381

                                                                       
Query: 61  agccaacctcgcccatgttccgttttcaactccagaacagatatgccaccctgataatct 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 agccaacctcgcccatgttccgttttcaactccagaacagatatcccaccctgataatct 321

                                                                       
Query: 121 gacaggtttccagcctagccatgttctgatagcctgagttagaggtgatgtctctcctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacaggtttccagcctagccatgttctgatagcctgagttagaggtgatgtctctcctac 261

                                                                       
Query: 181 tgtcaaacccccaacccagatgacaacagaactctgtaatggagcacccagagccaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtcaaacccccaacccagatgacaacagaactctgtaatggagcacccagagccaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)