BAC Information

Click to search

BAC

Clone NameMSMg01-399M15
Chromosome2 (Build37)
Map Location 154,249,154 - 154,249,499
singlet/doubletsinglet
Overlap genenone
Upstream gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneCbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M15.T7 (MSMg01no399_m15.b1)MSMg01-399M15.TJ (MSMg01no399_m15.g1)
ACCAG499567AG499568
length720797
length of high quality
(start - end)
349 (76 - 424)135 (83 - 217)
definitionCHROMAT_FILE: MSMg01no399_m15.b1 PHD_FILE: MSMg01no399_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005CHROMAT_FILE: MSMg01no399_m15.g1 PHD_FILE: MSMg01no399_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGGACTTCCCGGATTGCATGAGGCTCATCTCGTAAAAGA
AAAAAATAAACCAGGTATAGTGGCTTACATCAGTAATCCTAGCACTGGGA
AGAACTGGAAGAGAAGGATTGCTGAGACACTAGCTAGGGAGGGTTACACT
AGAAGAATCCTGTTTAAAAACAACATCAAAGCTCATCAGATCCTCTTACT
TCATAAGTATTCTTCTTTGTAGCCTTTTGAGGCATTTCTGAGACTCAAGA
ACCTGTAGGGGCTATAACTTCTGACCCATTTCAGTGTGTTACTGAGCGAT
ACCACCCCTCATTCTATTTTAAATTAACTTCTTTGTGAGACATTGTCGAA
TGTGACCTAGACCTTGATCTCCCCCCCCCCCCAGGGATGACCCTGAACTT
CTGATCCTTTCCCCACAACTACTTCTGGTTGGNTTGGTTTTTTTTTTTAT
AGACTTATTTAATTACCTTATGTATGTGAGCACACTGTTGCTGTCTTCAG
ACACACCACAAGAGGGCCTCTGATTTTATTACGGGCGGTCGCGAACCACC
ATGTGGTTGCTGCCACTGACTTCCCGACCCCCTTATTATGCGTAGCGTTC
TCACCCTTTGAGCCACTTTTCCCCGTCTCCCCGCTTTATCATTCCCACCT
TCTCAACTATAGTATGCTCT
TTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAGACTCCTCTGCCTCTATCTCC
TGAGTGCTATAACTATCCCCATTGAGGACACACTTTTTTTTTTTTAATGC
ATTTTTCTTTTTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTTTAAAGAT
TCATTTATTATTATATGCAAGTACCTTGCATCTGTCTTCAGACTCACTTT
AATAGTCAGTCAGACCCTGTTATGGATGGTTGTGACCCACCACGTGGTTG
CTGGGATTTGAACTCCCCATTTTCTTAACATTTATTACCACTCTTAATCG
CTGATTCACCCCTTCTGTCCTATTTATTCCCTTTAACACTCACTTACTTG
TCCTGTGTGTTTGTTGTTCCCCCACCGTTCCTTTTCCGCTTCATTCTCTT
TGCCTATTCCTTTGCTCTCTCCTCTCTATTGTCTGGTCGTTTCTTTGTAT
CTCTCCTCCCATTCTCTCACTATTTACTCATCCCTCTTCCCCCTTTTATC
TTTCACCCCCCACCCCCCCTCTTTTCCTTCTCTCCTCACTTTTACCTCCT
CTTTTCTAACCCCCCTTCTTTTTTTTTTTTCCCGTTCCCCCTTCTTCATA
TTTTTCAATTTTATTCCCCTCTCTCCCTCATTCTTCTCCCTCCCCTCTTT
TTTTCCCCCCTATATTCTATTTTTTTCTTTTTATTTCTCTTCTTCACTCC
TCCCTCTTCTTTCTCCGCGCATTTCTTCTCCCTCACTCCCACTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m15.b1 MSMg01no399_m15.b1 CHROMAT_FILE:
MSMg01no399_m15.b1 PHD_FILE: MSMg01no399_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:54 2005
         (349 letters)



>mm_chr2_154248954_154249702
          Length = 749

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatgaggctcatctcgtaaaagaaaaaaataaaccaggtatagtggcttacatcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatgaggctcatctcgtaaaagaaaaaaataaaccaggtatagtggcttacatcagta 260

                                                                       
Query: 61  atcctagcactgggaagaactggaagagaaggattgctgagacactagctagggagggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctagcactgggaagaactggaagagaaggattgctgagacactagctagggagggtt 320

                                                                       
Query: 121 acactagaagaatcctgtttaaaaacaacatcaaagctcatcagatcctcttacttcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactagaagaatcctgtttaaaaacaacatcaaagctcatcagatcctcttacttcata 380

                                                                       
Query: 181 agtattcttctttgtagccttttgaggcatttctgagactcaagaacctgtaggggctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agtattcttctttgtagccttttgaggcatttctgagactcaagaacctgtaggggctaa 440

                                                                       
Query: 241 aacttctgacccatttcagtgtgttactgagcgataccacccctcattctattttaaatt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttctgacccaattcagtgtgttactgagcgataccacccctcattctattttaaatt 500

                                                         
Query: 301 aacttctttgtgagacattgtcgaatgtgacctagaccttgatctc 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttctttgtgagacattgtcgaatgtgacctagaccttgatctc 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)