BAC Information

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BAC

Clone NameMSMg01-400C22
Chromosome2 (Build37)
Map Location 86,037,311 - 86,037,720
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52
Downstream geneOlfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400C22.T7 (MSMg01no400_c22.b1)MSMg01-400C22.TJ (MSMg01no400_c22.g1)
ACCAG499866AG499867
length811794
length of high quality
(start - end)		450 (50 - 499)410 (79 - 488)
definitionCHROMAT_FILE: MSMg01no400_c22.b1 PHD_FILE: MSMg01no400_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:24 2005CHROMAT_FILE: MSMg01no400_c22.g1 PHD_FILE: MSMg01no400_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGATTGACACCAAATGGCTGAGAAACACCTGAAAAA
AATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGCTTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATCTATCTAAAAGATGTTTCAACTAGTAAGAAAGAAACATGCTCTA
CTATGTTCATAGCAGTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCTCTCAACAGAGGAATGGATACAAAAATTGTGGTACATTTACAC
AATGGAGTATTACTCAGCCATTAAAAAGAATGAATTTATAAAAATCCTAG
GCAAATGGTTGGACATAAAGGGGATCATTCTGTGTGAAGTACCCCAATCC
CAAAAAACCTCCAATGATATGGTCCCCCTGAAAGTGGGAATTTAACCCGC
AAACTTAAAAAACCCCCAAATAAGTTACCATTTGGCAAAAAACTGAAACT
CCCAAAAAAATAAAACCAAAGATGGGGACCTTTGCCCCTCTCTAAAATTG
GGAAAAAAACCCCCCGCCAGGGGTTATAAAAACAAGGTTTGGGTGTATAA
AAAAAGATGAG

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCTTTTATTTCTTTACCTG
AGCATATAGCTTTAATCCAATGATGAGAACTGAGAAGACATACAACAGAA
GAGCAGCAGAGAAAACACTGGCCAGTATATTGCCCAAATACCCAGAACAT
ACTGAGAAACTGTGGCAACATAGAGGACACTATGAAAATAGACTAAGTAG
ATGCCTATTTTGGATAGAATGTTTGAATTTACATGGAAAAGAAAACCCTA
AATTCTGAGTAAAATCTGTAATCTATAAATGGCAACAAATATACTTAATA
TTCATCAAATATATTATTTAAACATACTTTATTATGCCTTCATTGCCCAT
GTCATCTTGTGAACTTTTATTTTAAAATAAAATCTGGAGGCTGGGCATAT
CTCTGAGGTAATGGAGTGTTTATCTATTATGCATGAAACCCAAGGTTTTC
TCCCTAGAACCGCCCGGATGTGAAGTGCAGTTTGTGAAAAGAAAAAGTTT
GTTTCCATATTAAGCTATTGACAATATTCCCCACCTTTAAACCCTCCAAA
AAAAACAAGTAGGTGAAGGGCTCATTCTCTTTACAAGGACATGGTTCTTC
CCGGGTTAACCTTACCCCCCCCCCCAAAATAAAACCTCTCCCACAAATGG
TACAAAAGATGGCCCCTCCTTCAAAGTTTTAACCCCCGGGTTTTTAAACG
CGGGGTTTGTATCCCCCAACCCGGGGGGAATCCCGAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_c22.g1 MSMg01no400_c22.g1 CHROMAT_FILE:
MSMg01no400_c22.g1 PHD_FILE: MSMg01no400_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:24 2005
         (410 letters)



>mm_chr2_86037111_86037920
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcttttatttctttacctgagcatatagctttaatccaatgatgagaactgagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 actgcttttatttctttacctgagcatatagctttaatccaatgatgagaactgagaaga 551

                                                                       
Query: 61  catacaacagaagagcagcagagaaaacactggccagtatattgcccaaatacccagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 catacaacagaagagcagcagagaaaacactggccagtatattgcccaaatacccagaac 491

                                                                       
Query: 121 atactgagaaactgtggcaacatagaggacactatgaaaatagactaagtagatgcctat 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 490 atactgagaaactgtggcaacatagaggacactatgaaaatagactaaatagatgcctat 431

                                                                       
Query: 181 tttggatagaatgtttgaatttacatggaaaagaaaaccctaaattctgagtaaaatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttggatagaatgtttgaatttacatggaaaagaaaaccctaaattctgagtaaaatctg 371

                                                                       
Query: 241 taatctataaatggcaacaaatatacttaatattcatcaaatatattatttaaacatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taatctataaatggcaacaaatatacttaatattcatcaaatatattatttaaacatact 311

                                                                       
Query: 301 ttattatgccttcattgcccatgtcatcttgtgaacttttattttaaaataaaatctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttattatgccttcattgcccatgtcatcttgtgaacttttattttaaaataaaatctgga 251

                                                             
Query: 361 ggctgggcatatctctgaggtaatggagtgtttatctattatgcatgaaa 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggctgggcatatctctgaggtaatggagtgtttatctattatgcatgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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