BAC Information

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BAC

Clone NameMSMg01-400D17
Chromosome2 (Build37)
Map Location 36,014,111 - 36,014,632
singlet/doubletsinglet
Overlap geneMrrf
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400D17.T7 (MSMg01no400_d17.b1)MSMg01-400D17.TJ (MSMg01no400_d17.g1)
ACCAG499904AG499905
length784781
length of high quality
(start - end)
527 (46 - 572)421 (79 - 499)
definitionCHROMAT_FILE: MSMg01no400_d17.b1 PHD_FILE: MSMg01no400_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:28 2005CHROMAT_FILE: MSMg01no400_d17.g1 PHD_FILE: MSMg01no400_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCG
GAATTCCAGTGGTTCCGCATGATCTGCTCTGGAAAAACCTGAAATACTTT
TGAGTATGTCAGAAGCCTTGTTCTTGTGAGTTTGTTGTCTTCCACCCACT
TTCTGTTGCTTTTAGGATTACTACAAGGTGAGGCTGAGTGTTAGGGACTC
TGTACCAGGGAGGGGGCCTGTCAGAGGGGCTCCTGAAGGGTGTTAGGATG
ATAGTGTTTCAGTGTAATGCTTCAATTGACTCTGCCATTAACTTGTGCTC
AGTACACGGACACAGTTTATTCTTTTTCTAACAGCTCTTACTGAATGTTA
ACAGTGCCAATCACTGAGTAAGGTGCTTTAGCTCACTCACTGTCTTAGTG
ATGTCCGGGTACCTCATCATTTCTGATTGTGAATGATCAAATATACCGCG
CAGGGATCCTGGTCCCAGAGCTAGATATAAACTGAAGCTTTTCTTACTCC
AAGATCTTGCTTTGACTCTTCTGCCATTCTGCCCTTTTTGCTGTGCACAC
CATTGGAGGTTTATTGCTTATGCCGAAGTGTGTGTAAGCTTGGTATTGAG
TGTAGATGTGACCGAGGTAAATTTATTTACTCTTTCCCCATTGGGACCGG
GATATATTTGGCGTAAAATGGCCACTGGATTTTTTTACGTTTGAAAATTT
TTTCTTGTCTTTTGTCCCCTTCTTTTCCATAACCAACCCTCCTCCCTTGG
AAATTTATTGGGGTGTTGAACTGCGGGGCCCTAA
NGGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGCCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTATCGGAGGAT
CCCGCAATACCTCTCCTGGGCATATATCAAGAAGATGTCCCAACCGGTAC
GAAGGATACATGCTCCACTATGTTCATATCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAN
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTACCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCACAAAGGAAATCCCCCATATGTACTCCCTGATAA
GTGGAATTTAACCCCAACTTTATATACCCAAGAAAAAAAAACAATTGCTA
AAGGGATGAAATCCCTAAAAAAGGAGGAAAAAAACCGGGAACTGGGCCCC
TCTTTTAATTGGAAAAAAAAACCCTGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_d17.b1 MSMg01no400_d17.b1 CHROMAT_FILE:
MSMg01no400_d17.b1 PHD_FILE: MSMg01no400_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:28 2005
         (527 letters)



>mm_chr2_36013906_36014832
          Length = 927

 Score =  862 bits (446), Expect = 0.0
 Identities = 503/530 (94%), Gaps = 16/530 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccagtggttcc---gcatgatctgctctggaaaaacctgaaatacttttgagtat 62
           ||||||||||||   |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccagtgg---catggcatgatctgctctggaaaaacctgaaatacttttgagtat 262

                                                                       
Query: 63  gtcagaagccttgttcttgtgagtttgttgtcttccacccactttctgttgcttttagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcagaagccttgttcttgtgagtttgttgtcttccacccactttctgttgcttttagga 322

                                                                       
Query: 123 ttactacaaggtgaggctgagtgttagggactctgtaccagggagggggcctgtcagagg 182
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgctacaaggtgaggctgagtgttagggactctgtaccagggagggggcctgtcagagg 382

                                                                       
Query: 183 ggctcctgaagggtgttaggatgatagtgtttcagtgtaatgcttcaattgactctgcca 242
           |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 ggctcctgaagggtgttagggtgatagtgtttcagtgtaatgcttccattgactctgcca 442

                                                                       
Query: 243 ttaacttgtgctcagtacacggacacagtttattcttttt-----ctaacagctcttact 297
           |||||||||||||||||||||||||||||||||||          |||||||||||||||
Sbjct: 443 ttaacttgtgctcagtacacggacacagtttattc-----acacactaacagctcttact 497

                                                                       
Query: 298 gaatgttaacagtgccaatcactgagtaaggtgctttagctcactcactgtcttagtgat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaatgttaacagtgccaatcactgagtaaggtgctttagctcactcactgtcttagtgat 557

                                                                       
Query: 358 gtccgggtacctcatcatttctgattgtgaatgatcaaatataccgcgcagggatcctgg 417
           |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 558 gtcccggtacctcatcatctctgattgtgaatgatcaaatatacctcgcagggatcctgg 617

                                                                       
Query: 418 tcccagagctagatataaactgaagcttttcttactccaagatcttgctttgactcttct 477
           |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 618 tcccagagctggatataaactgaagcttttctgactccaagatcgtgctttgactcttct 677

                                                             
Query: 478 gccattctgccctttttgctgtgcacaccattggaggtttattgcttatg 527
           |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 678 gccattctcccctttttgctgtgcataccattggaggtttattgcttatg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)