BAC Information

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BAC

Clone NameMSMg01-400L20
Chromosome2 (Build37)
Map Location 88,795,240 - 88,795,727
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211
Downstream geneOlfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400L20.T7 (MSMg01no400_l20.b1)MSMg01-400L20.TJ (MSMg01no400_l20.g1)
ACCAG500289AG500290
length782777
length of high quality
(start - end)
459 (50 - 508)460 (80 - 539)
definitionCHROMAT_FILE: MSMg01no400_l20.b1 PHD_FILE: MSMg01no400_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:09 2005CHROMAT_FILE: MSMg01no400_l20.g1 PHD_FILE: MSMg01no400_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTGTATGTCGATAAACAAATCTCTTCCCATGACATTCTG
AGACGTAGTTTTTCTTCAGATTATCAAGGCTGCTCAACTCTTCTTAAAAC
TGTACTATTAATTCCCTGATATCTCAACCTTACTCAAGTTACAGAATGTA
AGAAAATGAACTTTTCTGGTTTTCTTTTCCTTTGGATGCCTGAAAGTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCAGGTACTTTTGATAAAAACACAAAGCCATTACA
ACAGTCACTAAAGTACTGTAGAACTACAAGCACTTTAATTTTTCTAAAGA
GTCCTTAGGTTGGAAGTTAATAGCAACTAGAAGATTCTATGTGTCCTCTG
TGCTATGTGTACATGTGTAGTGGTGGAAAATAATCACACTTTACTTTTGC
TATCAATCAATTATAGCAATGTGTCTCAACCTTCCTAAGGCTACAGTCCT
TTAACACAATTCTTTTATGTTGTGGTGACCCTCCACCACAAAATTATTTT
CATTGCCACTTCAAAAATAAAATTTTGTAACTTAAGAATTTTACCTGAAA
TAACCTGTGTTTTTTAAAGGGAATAAAAAAACCGGGGAAAAAAAAATTTT
TCCCCCCTCAGGGGCCCCAATCTTTATTTTGGTGAACGGCCGGACTACAA
ATTTTTTTTTTCCCCCTCTTTTATACCGTGCG
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAAAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTA
AGATCAAAAACTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGG
GGAACATTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGGTTCCTCAGAAATTTGGACATAGTACTACCGGAG
GATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGAACACATGCTCCACTATGTTCATAGCAGACTTGTTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGAATACTACACAGCTATTTAAAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCC
TGAGTGAAGTAACCCAATCACAAGGGAACTCGCACAAAATGTACTCACTG
AAAACGGGATAATAGCCCCCAAACTTAGGAAACCCCAGAATAAGAAAAAC
ACTTGCCCCCCCAAGGAATTTCCGAAAAACGAGACCACAGGGGGAACACT
TTACCCTTTCTTAAAAAGGGAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_l20.b1 MSMg01no400_l20.b1 CHROMAT_FILE:
MSMg01no400_l20.b1 PHD_FILE: MSMg01no400_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:09 2005
         (459 letters)



>mm_chr2_88794871_88795729
          Length = 859

 Score =  654 bits (338), Expect = 0.0
 Identities = 431/488 (88%), Gaps = 43/488 (8%)
 Strand = Plus / Minus

                                                                       
Query: 15  gtatgtcgataaacaaatctcttcccatgacattctgagacgtagtttttcttcagatta 74
           |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 857 gtatgtagataaactaatctcttcccatgacattctgagacatagtttttcttcagatta 798

                                                                       
Query: 75  tcaaggctgctcaactcttcttaaaactgtactattaattccctgatatctcaaccttac 134
           |||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||
Sbjct: 797 tcaaggctgctcaactgttcttagaactgtactattaattccctgacatctcaactttac 738

                                                                       
Query: 135 tcaagttacagaatgtaagaaaatgaacttttctggttttcttttcctttggatgcctg- 193
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 737 tcaagttacagaatgtaagaaaatgaacttttctggttttcttttcctttcgatgcctgg 678

                                                                       
Query: 194 aaagttctctctctctctctctctctctctctctctctctctctctctctctctctctct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaagttctctctctctctctctctctctctctctctctctctctctctctctctctctct 618

                                                                       
Query: 254 ctctctctctctc-----------------tcaggtacttttgataaaaacacaaagcca 296
           |||||||||||||                 |||||||||||||| ||||| |||||||||
Sbjct: 617 ctctctctctctcattgctctgttaataattcaggtacttttgagaaaaagacaaagcca 558

                                                                       
Query: 297 ttacaacagtcactaaagtactgtagaactacaagcactttaatttttctaaagagtcct 356
           |||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||||
Sbjct: 557 ttacaacagtcactaaagtagtgtagagcttcaagcactttaattttcctaaagagtcct 498

                                                                       
Query: 357 taggttggaagttaatagcaactagaaga---------------ttc----------tat 391
           |||||||||||||||||||||||||||||               |||          |||
Sbjct: 497 taggttggaagttaatagcaactagaagactctgctctcaccatttcgaaatggtgctat 438

                                                                       
Query: 392 gtgtcctctgtgctatgtgtacatgtgtagtggtggaaaataatcacactttacttttgc 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgtcctctgtgctatgtgtacatgtgtagtggtggaaaataatcacactttacttttgc 378

                   
Query: 452 tatcaatc 459
           ||||||||
Sbjct: 377 tatcaatc 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 46
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)