BAC Information

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BAC

Clone NameMSMg01-400M01
Chromosome2 (Build37)
Map Location 170,987,660 - 170,988,018
singlet/doubletsinglet
Overlap genenone
Upstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
Downstream geneLOC100043743, LOC100043744, Cbln4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400M01.T7 (MSMg01no400_m01.b1)MSMg01-400M01.TJ (MSMg01no400_m01.g1)
ACCAG500299AG500300
length776771
length of high quality
(start - end)
249 (77 - 325)359 (131 - 489)
definitionCHROMAT_FILE: MSMg01no400_m01.b1 PHD_FILE: MSMg01no400_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:10 2005CHROMAT_FILE: MSMg01no400_m01.g1 PHD_FILE: MSMg01no400_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTATAATTTGCGGACGCTAAACGACTCCTATATTTCGAGAATCCGCGG
AATTCATGCGTCCATCACGCTGAACTTCAGTGGTGTCATTACTCTGTTTA
GTTGTTGGTTCCTTGTCTGGAATGACAAGGCATTTGTTCATATCTCCCCA
GAAATAGTCATAAAAAATGAGCACACCTACATGTGCATATACATGCATGC
ATACATGTTCGTATACATATGCTCACACACACATGCACACATGTGCACAT
GCATGCACACATATACATACACACATGCACACACATGCATTTGCACTCAC
ATGCATGAACACCCATGCACATACTCTTTTATACACAATGCATACATGTA
ATGTATACAAAAATATACATACACACATATATGCACACATGCACATGCAT
ACACAAATGCACACACTCACACAACACATACACATGAAGCACATGCACAC
ACACATGTATACACACATGCACATACATGCATGTATACATAGGCACCCCC
CACAGGCATGCACACACATGCACCACAAACACACACACCACACAATGCAA
TGCACACCCGAATGCTAACACACACACACACACATGCCCATACACATATG
CATGCACACACACACACACACTTTTATACTTTCACTCCCATATCCATCAC
TCTCTCACAAAAAAAATGTTTTTTTTTAGATATTAAAGAAATCCCCACTG
TTAAAGATTTAAATCACACTGTAACACAATTTATTGCTTTTTGTCTCCTT
CCCCAACAAATTGCCCCTAAAACCTN
TATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTACTTTTACCGGAGGTAAGNCTTAAGAAACTTATCTGA
GGCCATGTAATGTAGATTTTTGCTCATGACAAAACATCTTTTGCAAGAAA
CAAAACATCTGGTCCATTGTGGTGGCATATGCCTATAATCCTAGAGCATG
GGGTGCTAAAACAGGGGCATCATGAGTTTGAGGCTAACTTCGGCTAAAGA
GTATGTCTCAAAAAATAGCCTACAAGAGCAGAAAGGCTGTTTAATGTCAT
ATATCAGTCTTGAGTTACAGGTTTATTCTCTATAAGTTCAATTGGTGAAT
TCATTGGTGTTTTTCTATTTCACCCAACATATAATTAATTATGATAAGCA
AGGATTAGGAAGAGTTAAGAAAACGCTAAATAAACCAGTGTGTAAATCAC
AATTTGGGCCAGTTTTGTGGTTGTGGCTTTAATTTTGGTTTGTTTGTTGC
GAGCACTAGCCATGATTTCTGGCGAGAGGAACTTGATTGAAAGATGTTTC
CTCACGCCCATTTGATCCCCTAATATCTGCTTGCACTCTTATAAGTATGA
ATCTACCCCCACTGCGCTGCCCTCCCCGGAATCTTCTCATCTTACCACAC
GGAATCTTGCCCGATTTCTCTTTTTCCTCCCTTGCTCCGTTTTTTTTAAT
TCTCCCTCTTCCCTCTTATGGAGTCATTTTCCTTCTCCCCGCTTTTTTCC
ACTATGTATCCCCCTCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_m01.g1 MSMg01no400_m01.g1 CHROMAT_FILE:
MSMg01no400_m01.g1 PHD_FILE: MSMg01no400_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:10 2005
         (359 letters)



>mm_chr2_170987460_170988218
          Length = 759

 Score =  617 bits (319), Expect = 0.0
 Identities = 349/359 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacatcttttgcaagaaacaaaacatctggtccattgtggtggcatatgcctataatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacatcttttgcaagaaacaaaacatctggtccattgtggtggcatatgcctataatc 260

                                                                       
Query: 61  ctagagcatggggtgctaaaacaggggcatcatgagtttgaggctaacttcggctaaaga 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 261 ctagagcatggggtgctaaaacagggccatcatgagtttgaggctaacttgggctaagga 320

                                                                       
Query: 121 gtatgtctcaaaaaatagcctacaagagcagaaaggctgtttaatgtcatatatcagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatgtctcaaaaaatagcctacaagagcagaaaggctgtttaatgtcatatatcagtct 380

                                                                       
Query: 181 tgagttacaggtttattctctataagttcaattggtgaattcattggtgtttttctattt 240
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttacaggtttattcactataagttcaattggtgaattcattggtgtttttctattt 440

                                                                       
Query: 241 cacccaacatataattaattatgataagcaaggattaggaagagttaagaaaacgctaaa 300
            |  ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 441 aagtcaacatataattaattatgataagcaaggattaggaagagttaagaaaatgataaa 500

                                                                      
Query: 301 taaaccagtgtgtaaatcacaatttgggccagttttgtggttgtggctttaattttggt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaccagtgtgtaaatcacaatttgggccagttttgtggttgtggctttaattttggt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)