BAC Information

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BAC

Clone NameMSMg01-401B23
Chromosome2 (Build37)
Map Location 49,612,792 - 49,613,156
singlet/doubletsinglet
Overlap geneKif5c
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
Downstream gene2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401B23.T7 (MSMg01no401_b23.b1)MSMg01-401B23.TJ (MSMg01no401_b23.g1)
ACCAG500582AG500583
length771754
length of high quality
(start - end)
482 (79 - 560)365 (78 - 442)
definitionCHROMAT_FILE: MSMg01no401_b23.b1 PHD_FILE: MSMg01no401_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005CHROMAT_FILE: MSMg01no401_b23.g1 PHD_FILE: MSMg01no401_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAACATCCGCG
GAATCNCAACTGAGTACAACAACAGGCCAAGAAGAACCTAAAGAAATGTT
CAACATCCTTATTCACAGGTAAATGCAAATCAAAACAACCCTGAGATTCT
ACCTCACACCAGTCAGAATGTCTGAGATCAAAAACTCAAGTGACAGCAGA
TGCTGGTGAGGATGTGGAGACAGAGGAACACTCCTCCATTGCTGGTGGGA
TTGCAAGCTGGTACAACCATTCTGGAAATCAGTCTGACAGTTCCTCAAAA
AATAGGACATAGTACTATCTGATTATTTTTTTATACCACTCCTGGGCATA
TGTCCAAAAGATGATCTAACATATAACAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTC
CTTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAA
TACTACTCAGTTATTATAAACAATGACCTCATGAAATTCTTAGGTAAGCA
GATGAAACTAGAAAACATCATCCTAAGTGAGGTAACCCAGTCACAAAATA
ACACACATTTCCTGATAAGTGAATATTAGCCTAAAAGCTTGGGCTACCCA
AGATACAATTCACAGACCATGTGAAGCTCAAGAAGGCTGACCAAAGTGTG
GATGCTTTTGTTCCTCTTAGGATGGAATAATACTATGTGTCGAAATTTTG
CAAACCAATCGCTTATCCCAA
CGATGATGTGNGAGGCCTGGNGGNCGCCTGGTTTCCAACACGGGGTGAAC
TANAGAAGGTTACCAAAACAGCAAGNCCCACTGGATCTATCCTAGCCTTT
CAGGTGAGTGAAATCTCACACAAGTTCATGTCACTCTCACCCCTTGGTAC
ACACATACCGATCTGAGCCGAATGTGCCCTCCTGGCCATGTTCTTGGCTC
GCACAGCCTCCTTGATGCGATCCACTTCCTGCTGGTAGCGCTTTCGGTCC
CTCATGGCATTCTCCTTGGCCTCTTTCAGCGCACTCTCCAAGGCCTTGAC
GCGTTCTGCGGTAGCACTTTTTTTCTTCTCCAGCTTGGGGAGTTCACAGC
GCAAATCTGCATTGTCCCGGACCAGCTGCAGCAGAGGGGCAAAGAAGCCA
GGTTTGAGCAAGGCTGTGCTACTCCCTGGCAGGACAAGGACATGGAAGAA
GAGACAAACCTGACTAGCAGCCAGACCATCACCCTACTAGGCTGTCTCTG
ATGGTCCATATAACTCCAGCTCACAGGAGCAGTAATAAGGCGCATGTATT
GAACTAGTAACCATGTCCATCCACAGGCCAGGTGCATCCTTGCTTGACTG
TGCCTGGTAACGTAACAGCTCGTGATCAATTTATTACTCTACTATGCACT
TGTTATTTGACCTATTCCCCGCCCTTACATGCGCAACTCCTATAGTCCTC
TTATAACTTGTACACCATATTCCGCAATTGCCCCTTCTTTTACCCCACCT
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_b23.g1 MSMg01no401_b23.g1 CHROMAT_FILE:
MSMg01no401_b23.g1 PHD_FILE: MSMg01no401_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:40 2005
         (365 letters)



>mm_chr2_49612592_49613356
          Length = 765

 Score =  632 bits (327), Expect = 0.0
 Identities = 355/371 (95%), Gaps = 12/371 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactggatctatcctagcctttcaggtgagtgaaatctcacacaagttcatgtcactct 60
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 565 ccactggatctatcctagcctttcaggtgagtgaaatcccacataagttcatgtcactct 506

                                                                       
Query: 61  caccccttggtacacacataccgatctgagccgaatgtgccctcctggccatgttcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caccccttggtacacacataccgatctgagccgaatgtgccctcctggccatgttcttgg 446

                                                                       
Query: 121 ctcgcacagcctccttgatgcgatccacttcctgctggtagcgctttcggtccctcatgg 180
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 445 ctcgcacagcctccttgatgcgatctacttcctgctggtagcgttttcggtccctcatgg 386

                                                                       
Query: 181 cattctccttggcctctttcagcgcactctccaaggccttgacgcgttctgcggtagca- 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 cattctccttggcctctttcagcgcactctccaaggccttgacgcgttctgcggtagcac 326

                                                                       
Query: 240 -----ctttttttcttctccagcttggggagttcacagcgcaaatctgcattgtcccgga 294
                |      ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagcc------tcttctccagcttggggagttcacagcgcaaatctgcattgtcccgga 272

                                                                       
Query: 295 ccagctgcagcagaggggcaaagaagccaggtttgagcaaggctgtgctactccctggca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccagctgcagcagaggggcaaagaagccaggtttgagcaaggctgtgctactccctggca 212

                      
Query: 355 ggacaaggaca 365
           |||||||||||
Sbjct: 211 ggacaaggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)