BAC Information

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BAC

Clone NameMSMg01-401C15
Chromosome2 (Build37)
Map Location 116,437,236 - 116,437,730
singlet/doubletsinglet
Overlap genenone
Upstream geneBC052040, Mrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401C15.T7 (MSMg01no401_c15.b1)MSMg01-401C15.TJ (MSMg01no401_c15.g1)
ACCAG500614AG500615
length736756
length of high quality
(start - end)
495 (96 - 590)531 (77 - 607)
definitionCHROMAT_FILE: MSMg01no401_c15.b1 PHD_FILE: MSMg01no401_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:43 2005CHROMAT_FILE: MSMg01no401_c15.g1 PHD_FILE: MSMg01no401_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATAATTTGCGGCGCTAAACGACTCCTAATTCGAGACATCCGCGGA
ATCTCAACTTTCCCTCTCAATGGCTGAGAAGACTTANAGAAATGTTCAAC
ACCCTTAGTCATCAGGGAAATGCAAATCAAAGTGACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAACCTCAGGTGACAGCAGATGC
TGCTGAGAGTGTAGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTG
CAAGTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCTTCAGAAAATT
GCAAATAGTTCCTTCTGTGGACCCAACTATACCACTCCTGGGCATATACC
CTTTCTCCATTTTTTAAAGTAAATATACGTTGGATTATGTTTCTGTTTTG
TGTTTGTCAAGGACATGCTGGGCTACCTTACTGTGGGGTTTTCTCAGACC
TGCCTGTGGTATAAATATGGCACAGAGACTTATATACAGTTTAAAGCTTT
TGATCTTTCACTAGGGTAATCTCTCAGCTAGCATCTAACTTAACCTAACT
CTCAGACCTGTATCACAACCGCTTCTGCTTCCATCTGTTTGTTCCTTTTC
ATGACTATGGATCCATGACTCTGCATCCTTTCTGTTCCCTGCCTCCCATT
AAGTTCTGCCTCCTTACTTCCTGCATTAACTATTGGCTGTCAGATCCTTA
TCATACCAATTAGCAGTAAGACCATTGCCTGACCTN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCGGAGGAATAACGAATAGCA
GAGAAGCACCTGAAAAAAAGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCTTGGGCATATATCCAGAAGATGCCCCAATAGGTAAG
AAGGATACTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGGAACACATTCACAAAGGAACTCACACCATATGTACTCCCTGACAA
GTGGATATTATCCCCAAACCTAGGATACCCAAGATATTTGAACTATTTGC
TAAACTTCGAAATCCAGAAATAAGAATACTGTAGTGGGGACTCTATTGCC
CCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_c15.b1 MSMg01no401_c15.b1 CHROMAT_FILE:
MSMg01no401_c15.b1 PHD_FILE: MSMg01no401_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:43 2005
         (495 letters)



>mm_chr2_116437036_116437930
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacacccttagtcatcagggaaatgcaaatcaaagtgaccctgagattccacctcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaacacccttagtcatcagggaaatgcaaatcaaagtgaccctgagattccacctcaca 260

                                                                       
Query: 61  ccagtcagaatggctaagatcaaaacctcaggtgacagcagatgctgctgagagtgtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ccagtcagaatggctaagatcaaaacctcaggtgacagcagatgctgctgagagtgtgga 320

                                                                       
Query: 121 gaaagaggaacactcctccattgctggtgggattgcaagttgtacaaccactctggaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagaggaacactcctccattgctggtgggattgcaagttgtacaaccactctggaaat 380

                                                                       
Query: 181 cagtctggcagttcttcagaaaattgcaaatagttccttctgtggacccaactataccac 240
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 381 cagtctggcagttcttcagaaaattgcaaatagttccacctgtggacccaactataccac 440

                                                                       
Query: 241 tcctgggcatataccctttctccattttttaaagtaaatatacgttggattatgtttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgggcatataccctttctccattttttaaagtaaatatacgttggattatgtttctg 500

                                                                       
Query: 301 ttttgtgtttgtcaaggacatgctgggctaccttactgtggggttttctcagacctgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgtgtttgtcaaggacatgctgggctaccttactgtggggttttctcagacctgcct 560

                                                                       
Query: 361 gtggtataaatatggcacagagacttatatacagtttaaagcttttgatctttcactagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggtataaatatggcacagagacttatatacagtttaaagcttttgatctttcactagg 620

                                                                       
Query: 421 gtaatctctcagctagcatctaacttaacctaactctcagacctgtatcacaaccgcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaatctctcagctagcatctaacttaacctaactctcagacctgtatcacaaccgcttc 680

                          
Query: 481 tgcttccatctgttt 495
           |||||||||||||||
Sbjct: 681 tgcttccatctgttt 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)