BAC Information

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BAC

Clone NameMSMg01-401H23
Chromosome2 (Build37)
Map Location 160,294,876 - 160,295,108
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689, Gm826, Mafb
Downstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401H23.T7 (MSMg01no401_h23.b1)MSMg01-401H23.TJ (MSMg01no401_h23.g1)
ACCAG500869AG500870
length776768
length of high quality
(start - end)
536 (74 - 609)233 (329 - 561)
definitionCHROMAT_FILE: MSMg01no401_h23.b1 PHD_FILE: MSMg01no401_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005CHROMAT_FILE: MSMg01no401_h23.g1 PHD_FILE: MSMg01no401_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAATATTTGGCGGCGCTAAAAGACTCACATATTCAGAAATCCGCNGGA
TTCATAACTCTCTCCAGAAATACAGGAGAACACTGCTAAAGAGTTACAAG
TCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAA
GAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACA
GGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACC
TAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTG
GAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAG
CAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCA
TAGAGAACATCAGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATC
CTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCT
ACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCACAGGACCAG
CAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAA
GAGATGCCCATGAACATATCAGAAGCCTACAGAACTCCCAATAGACTGGA
CCAGACNAGACATTTCCTCCGATACATAATAATCCGAACACCAATGCTCT
AATTAAGGATAGAATACTACAAGCCCTTAGGTATAAGGCCTAGTAACCCT
ATTTTGGCGAGCCTATCAAATATAAN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGGAGGCAGGCTCTCTTTCTAAATCC
CAATGCACCTATTTCTTATAACCCCTGTGAAACTGTCCTAGATGCTCCCA
GAAAAGACCCCTCTTCTTTTTCCAGGGCCCAGCCATATGTGGATATGGAC
CCTTAGTCTCTAGAACATTCTAGCCCCTGATGTAATTCACCTATGGGCCC
AAATCTGGAAGGAACTATGAGAGCTTTGAATGACAAGGACACTGGGTCTC
AGGCCTGACTGGAAAGAGCNNCTCCATTGCAGGTGAGAATCCCATTCCAG
TGAGTGTTGTGTGAAGGAGCTGTCTGGTCACTCTGGAAGCAGGATATCAT
TTCACCAATGCTAGACGAGGTGAGTCCTTGGCTGCCCGACAGGGCATAAT
GGCTCTTGCTTCGTGTATGGTGATAAAGGCAGAGAGAAATTAAGCCTGGG
CAGATCTGTGTCTCCTGTAGCAGCCACAGTTGCTGAATCTGCCATTTTTG
AGAAAGTGAAATTCCAGTCCCCTGACTTCCCGTGGCTAGGCTATCAGGAC
ATGCTGAGGGGCGTCAGCTGACCTCTCTGGCTTCCTGGCAGAAAATGTAA
TTCTGCGTAATTTTTGTCTATGCCCCTGTAGCCCATCTGGGTCTGGAGCC
CCTTGACTTTTGTGTGGAGAAAAGGCAGGGAATTCCATCTATGGCCCTGC
TTTCTTGGCCCCCTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_h23.g1 MSMg01no401_h23.g1 CHROMAT_FILE:
MSMg01no401_h23.g1 PHD_FILE: MSMg01no401_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:08 2005
         (233 letters)



>mm_chr2_160294676_160295308
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaggtgagaatcccattccagtgagtgttgtgtgaaggagctgtctggtcactctggaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 433 gcaggtgagaatcccattccagtgagtgttgtgggaaggagctgtctggtcactctggaa 374

                                                                       
Query: 61  gcaggatatcatttcaccaatgctagacgaggtgagtccttggctgcccgacagggcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcaggatatcatttcaccaatgctagacgaggtgagtccttggctgcccgacagggcata 314

                                                                       
Query: 121 atggctcttgcttcgtgtatggtgataaaggcagagagaaattaagcctgggcagatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atggctcttgcttcgtgtatggtgataaaggcagagagaaattaagcctgggcagatctg 254

                                                                
Query: 181 tgtctcctgtagcagccacagttgctgaatctgccatttttgagaaagtgaaa 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgtctcctgtagcagccacagttgctgaatctgccatttttgagaaagtgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)