BAC Information

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BAC

Clone NameMSMg01-401I16
Chromosome2 (Build37)
Map Location 20,923,350 - 20,923,591
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC654360, LOC667609, Etl4, Arhgap21, LOC433408
Downstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401I16.T7 (MSMg01no401_i16.b1)MSMg01-401I16.TJ (MSMg01no401_i16.g1)
ACCAG500902AG500903
length770771
length of high quality
(start - end)
245 (74 - 318)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no401_i16.b1 PHD_FILE: MSMg01no401_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:11 2005CHROMAT_FILE: MSMg01no401_i16.g1 PHD_FILE: MSMg01no401_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTACAACATCCGCG
GAATCACTAGGTTGCCCAAGATGACCTCGAACTCACAGTGATACATCTGC
CTCTGCTTCCCCAGTGTTGGAATTAAAGGCGTGCTCCACCATCATCTGGC
AGTGATGTGTGAATCTTACTAGAGGAAAGACTATTACTGTTGGTGCTAGG
TGCTGTGGGTCCCTTGTTGATTACAGAAATACCAGTGACAAAGGGCAACA
CATTTTCCTTGAAACACCAAATATGTTTTTGCTGTCTTAAGCCTCTGAAA
TTCAGGGTGGATTTGTATTNAATANGTTTACCACTTCATCCTAATTAGCA
TGGTGTTTATCATACACTGACATTCTTGTACTTAGGTCATAGTTATTCTT
TGTTTTAATTTCTGTCCTTGTTTCTATGGTGATAAGTCTTGATTACTTTT
CCTTTGGCTCCATACTGTTTATTGAGCTGCAACAATCCTTTCTGCTAACT
TTCCAGCGGGTTTTATTTTCTGCGAAATCGTCACATCACAAAAATCTTTC
TTGAACGACTATCAATAGTGGAGTAGTTGGAATACATACCTTGACTCATT
ATATTTGGCTAGCAAAAAGCATATTCTTTTTTACTAGACCTCCACCCCTT
CAGCTGTTCTTTTTTACTGTTTCACCTAATCGGCCGTAACTTATCTCTTA
AGCTCCCTGTTTCCCCTTTATACATTGATTTCCCCTTCTCTTGTTTACCT
CTCGCCCTTAAGGTTCTTTT
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAGGGCTG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGGGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGATTTTTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAATTGGTAAGA
AGGATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACCTCCTGATAAG
TGGATATTAGCCCATAACCTATGATACCCCAGATATAAGATACCATTTCC
TAAACACCTGAAAATCTACGAAAAACTGACGAATTGAAGTGTGGGACCAC
ATGGCCCCTCCTTTAAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_i16.b1 MSMg01no401_i16.b1 CHROMAT_FILE:
MSMg01no401_i16.b1 PHD_FILE: MSMg01no401_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:11 2005
         (245 letters)



>mm_chr2_20923073_20923717
          Length = 645

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcgaactcacagtgatacatctgcctctgcttccccagtgttggaattaaaggcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acctcgaactcacagtgatacatctgcctctgcttccccagtgttggaattaaaggcgtg 460

                                                                       
Query: 61  ctccaccatcatctggcagtgatgtgtgaatcttactagaggaaagactattactgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctccaccatcatctggcagtgatgtgtgaatcttactagaggaaagactattactgttgg 400

                                                                       
Query: 121 tgctaggtgctgtgggtcccttgttgattacagaaataccagtgacaaagggcaacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 399 tgctaggtgctgtgggtcccttgttgattacagaaataccagtgacaaagggcaacacag 340

                                                                       
Query: 181 tttccttgaaacaccaaatatgtttttgctgtcttaagcctctgaaattcagggtggatt 240
            ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 339 cttccttgaaacaccaaatatgtttttgctgtctcaaacctctgaaattcagggtggatt 280

             
Query: 241 tg 242
           ||
Sbjct: 279 tg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)