Query= MSMg01no401_o22.b1 MSMg01no401_o22.b1 CHROMAT_FILE:
MSMg01no401_o22.b1 PHD_FILE: MSMg01no401_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:40 2005
(450 letters)
>mm_chr2_81410548_81411395
Length = 848
Score = 563 bits (291), Expect = e-164
Identities = 384/441 (87%), Gaps = 46/441 (10%)
Strand = Plus / Minus
Query: 1 gactgcactgggctagaatttttggctgtggttttgtttgtttgatagatttgaaaacag 60
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 413 gactgcacttggctagaatttttggctgtggttttgtttgtttgaaagatttgaaaacag 354
Query: 61 agaatgaatgatgataaaaaaataaagtactgagaagttttgtttttgttttttgttgtt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 353 agaatgaatgatgataaaaaaatcaagtactgagaagttttgtttttgttttttgttgtt 294
Query: 121 gttttttttaagattatacatctatttaatcaaaaaaaatccaaattaaaagatacccca 180
||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 293 --tttttttaagattatacatctatttaatcaaaaaatttccaaattgaaagatacccta 236
Query: 181 aaactgtattatttctgttttggtcttctggttgctgttgtcattttaaatacatgattt 240
||||||||||| ||||||||||||||||||||||| | ||||| |
Sbjct: 235 aaactgtattagttctgttttggtcttctggttgc-------a----aaata-------t 194
Query: 241 atatatatttttttttattatttttattaggtattttcttcatttacatttccaatgcta 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atatatat--------actatttttattaggtattttcttcatttacatttccaatgcta 142
Query: 301 tcccaaaagcgctgct--cccccctccccac----------------tccactacccacc 342
|||||||||||||||| |||||| |||||| |||||||||||||
Sbjct: 141 tcccaaaagcgctgcttccccccccccccacacacacacaaacacactccactacccacc 82
Query: 343 aactccaacttcttggccctggcattcccctgtactgaggcatataaagtttgcaagacc 402
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 81 aactccaacttcttggccctggcattcccctgtaatgaggcatataaagtttgcaagacc 22
Query: 403 aagggtctctcttcccaatga 423
|||||||||||||||||||||
Sbjct: 21 aagggtctctcttcccaatga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space: 368720
Effective search space used: 368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_o22.g1 MSMg01no401_o22.g1 CHROMAT_FILE:
MSMg01no401_o22.g1 PHD_FILE: MSMg01no401_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:40 2005
(471 letters)
>mm_chr2_81230481_81231347
Length = 867
Score = 774 bits (400), Expect = 0.0
Identities = 454/478 (94%), Gaps = 13/478 (2%)
Strand = Plus / Plus
Query: 1 aagaggggaatgaagaagacaaaaatgtatgctaacataagtgagtatttacagacacca 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aagaggggaatgaataagacaaaaatgtatgctaacataagtgagtatttacagacacca 253
Query: 61 gtcatctcacttcctatagcataaacttagagatggaagcctttagaatgaacagagata 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtcatttcacttcctatagcataaacttagagatggaagcctttagaatgaacagagata 313
Query: 121 attgttctctctctttaagtagacagggagatataaggagaaaatattttctagaatctt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 attgttctttctctttaagtagacagggagatataaggagaaaatattttctagaatctt 373
Query: 181 ctggtctttaatttcatttaatttaagaaaccaggtgtgacatgctgaggtgacagtcc- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctggtctttaatttcatttaatttaagaaaccaggtgtgacatgctgaggtgacagtccc 433
Query: 240 ------gtcatgcttgtttgtttgggcccttagaacagtagacagcaggctggagtaagt 293
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 434 taaactgtcatgcttgttggtttgggcccctagaacagtagacagcaggctggagtaagt 493
Query: 294 ctctgagagacttactgggaagtaattctgaatggaattaaagcaaagcaaaccaaggca 353
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 494 ctgtgagagacttactgggaagtaattctgagtggaattaaagcaaagcaaaccaaggca 553
Query: 354 ttaaaatccttggagacatcattggtatcatgggctctaagaattgattgtccattgttc 413
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 554 ttaaaat----ggagacatcattggtatcatgggctctaagaattgtttgtccattgttc 609
Query: 414 tggcaattaagcatggatttccataataatactctg-tgttcaagtgctaatactcag 470
||||| |||||||||||||||||||||||||||||| | | |||||||||| ||||||
Sbjct: 610 tggcacttaagcatggatttccataataatactctgctct-caagtgctaaaactcag 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 867
Length adjustment: 10
Effective length of query: 461
Effective length of database: 857
Effective search space: 395077
Effective search space used: 395077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
