TATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTAATCTTTCATTAAATTCAGAGTTTTGTTAAACACTAATTATAGT
ATAACATAAATCTTTATTTTCTACATTCTTGAAATCCACTATAATTACTT
AAAAAACATTAATTTGATAGAAATATCTCATCTCATTCTATCTACATCTG
TTATGCTAAACTAAGGTGTAGCACATAGTTACCACCACTAATGTGGGAAA
TGCTATGTTTTGCCATTATCAATAAATGGCAACAATCATTTATGCTGTGC
AAGTCCTTTTATAAGAGATTATAATTGTCTTAATGGAGAGAGACATATTT
TGTAGTTCAATAAGAGTTCACTTTAAGCGAGTTCAAATATTTTTTAAATA
TGCACAATATATACATATATATTTCAACAAGCACACACATATACATACAC
ATACCTAGACACATAAAGACACATACATATCCATGACTATGCTGCTAATC
TAGTTGCAATGTATGTATTATAGATAGTCTATTGTAATATAAAATCACAC
TATGGCATTTGGGAGTAATTTTGATGTTTATACTGGTAATACACAAACAC
ACAAACACATATATATTTCATATAATATACATATATTTAATATATTATAT
AATTATAATATATGTTTATTATATATATTCTGCTTCCCTTTTAATTTTAG
AGAACAAAATGCACATTTTTAATTTGCTAAATTTATATTCAGGAAGA

NNNNNNTTTTCCCTTTTTTNCCCNCCCCCCCNNNNNNNNGGTNTCTNNNN
NNNNNNNGGGCCACATGTAACAAGATGGGGGGTTAGAGGGCCCTGGGGGC
GCGGGGCCCGCCCCCCGGGGGTCTCTTGCTCCGCAAAAAAAAAATTGTAA
GAGGGGGGGGGGGGAAAAACCCCCCAAAAATAAGAAAAAGGGTTATTCCC
CCCGCGGCGGAAAAAANNATACTCCGGCNAAAAAAAATATGGCGGCGGGG
GGGGGGCGGAACAANNNCAANNAAAAAAAAAAAAAAAAGGGGGGGGGGAG
AAACAAAAAAACAAGGGGGCGCGCCCCTTTATCCTCCCCAAAAGTATAAA
AAAAAAAAACCGCGGGGAGAAAGAAACACACCCCCCCCCCACACAAAAAA
GAAGGGAGGGCGCCCCCCCCCCCGCCACCAAAAAAAATAATAAAAAACCT
CCCTCCTCTCCCCCCCCCCCGCGCGGGGGGGGGGGGGGGGAGGCCCAAAA
CAACAAAAAAGAAAACACCACCCCCGCCCCCTCCTAAATAAAAAAAAAAA
AGAGGGGGGGAGACGCCACCCCCTCCGCAGAAGAAAAAAAAAAACAAAAC
CCACACAGAGGGAAGGGTGGGGGGGAGGGGGCGCGCCACAACAAAAAAAA
AAATAATTTTTTCCTTCTCCCCGCCAAAACAAAAAGAGAGAGAGGGGGGA
GAGGGAGAGGAGAAACCAATAACCCACACTACCACACCAAAAAAGACAAN
ACATAGACAGAGCGGTGTGTGGGTTGGGTCATGACTACCATTACCCAACA
CAAACAAAAGGAACCACACCTACACCGAGAGCGGCGGGGGGGTCGCGAGC
GCCCCCCCCCCTCTCCTCCCCCCCCCCCCCCGNCGAGCCGTCCGCCCATC
CAAACATAAATACACAAAAGACAACACACAAANACATAACTGCCACATCC
TACCTGCCCCCCCCGCCTCCGCGCCCCCAGGCGGCGCGAAGGGAGCCGGG
AGGG

Query= MSMg01no402_a11.b1 MSMg01no402_a11.b1 CHROMAT_FILE:
MSMg01no402_a11.b1 PHD_FILE: MSMg01no402_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:47 2005
         (653 letters)



>mm_chr2_42363843_42364896
          Length = 1054

 Score = 1125 bits (582), Expect = 0.0
 Identities = 633/650 (97%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaatctttcattaaattcagag-ttttgttaaacactaattatagtataaca 63
           ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 205 gaattctttaaactttcattaaattcagagtttttgttaaacactaattatagtgtaaca 264

                                                                       
Query: 64  taaatctttattttctacattcttgaaatccactataattacttaaaaaacattaatttg 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 265 taaatctttattttctacactcttgaaatccactataattacttaaaaaactttcatttg 324

                                                                       
Query: 124 atagaaatatctcatctcattctatctacatctgttatgctaaactaaggtgtagcacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 atagaaatatctcatctcattctatctacatctgttatgctaaactaaggtatagcacat 384

                                                                       
Query: 184 agttaccaccactaatgtgggaaatgctatgttttgccattatcaataaatggcaacaat 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agttaccaccactaatgtgggaaatgctatgttttgccattatcagtaaatggcaacaat 444

                                                                       
Query: 244 catttatgctgtgcaagtccttttataagagattataattgtcttaatggagagagacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catttatgctgtgcaagtccttttataagagattataattgtcttaatggagagagacat 504

                                                                       
Query: 304 attttgtagttcaataagagttcactttaagcgagttcaaatattttttaaatatgcaca 363
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 attttgtagttcaataggagttcactttaagcgagttcaaatattttt-aaatatgcaca 563

                                                                       
Query: 364 atatatacatatatatttcaacaagcacacacatatacatacacatacctagacacataa 423
           ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 564 atatatacatatatatttcaacaagcacatacatatacatacacatatatagacacataa 623

                                                                       
Query: 424 agacacatacatatccatgactatgctgctaatctagttgcaatgtatgtattatagata 483
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 624 agacacatacatatccatgactatgcggctaatctagttgcaatgtaggtattatagata 683

                                                                       
Query: 484 gtctattgtaatataaaatcacactatggcatttgggagtaattttgatgtttatactgg 543
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 gtctattgtaatataaaatcacacgatggcatttgggagtaattttgatgtttatactgg 743

                                                                       
Query: 544 taatacacaaacacacaaacacatatatatttcatataatatacatatatttaatatatt 603
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taatacacaaacacagaaacacatatatatttcatataatatacatatatttaatatatt 803

                                                             
Query: 604 atataattataatatatgtttattatatatattctgcttcccttttaatt 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atataattataatatatgtttattatatatattctgcttcccttttaatt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space:   671292
Effective search space used:   671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)