BAC Information

Click to search

BAC

Clone NameMSMg01-402N18
Chromosome2 (Build37)
Map Location 88,971,744 - 88,972,296
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222
Downstream geneOlfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402N18.T7 (MSMg01no402_n18.b1)MSMg01-402N18.TJ (MSMg01no402_n18.g1)
ACCAG501907AG501908
length731740
length of high quality
(start - end)		499 (52 - 550)553 (80 - 632)
definitionCHROMAT_FILE: MSMg01no402_n18.b1 PHD_FILE: MSMg01no402_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:54 2005CHROMAT_FILE: MSMg01no402_n18.g1 PHD_FILE: MSMg01no402_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCATCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTAGGAG
TTTTATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCGTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
ATTGGTCTACTTGTCTGTCTCTATACCAGAACCATGCTGTTTTTTATCAC
AATTGCTCTGCAGTAAAGCTTTAGGTTTGGCATGGTGATTCCTCCAGAAA
TTCTTTTTATCCTTGAAAAATCTTTTTGCTA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAATTTAATCTTGTCCAC
TTTATTTCTCCTAATCTTTAATATACAACTCAGAGAGGTTTCAACTAAGT
GTTTGAAACTCTGAACTGTTTTAGTGCTAGTATATTTCTCTTTGAATGTA
AACTGAATCACCAAGACATCATCTGATATACAGGACTTAAGAAAAAGAGA
AGAGACCTTTTGTTTTCATTTCAGAAACTCTATGACAAGCCAAATTGAGA
CATTTAGGGAAATCTGGAGAGTATCAATTGGGAGAGGAAAAAAAAAAGAA
ACTAATCTTAAGAGTATGTATTTCCCACAGGATCATGAAAAGGCATTTTC
TTAGAAATAAATACAGAAAATAATAGTCTTAGATTAAAAATATGATGGCT
TTATGGAGTTTAATATATAGAACAATTTTAAATAAGATTATAATTTACTG
TTATTTGTAAGACATTATTTATTTATATGCAATATATTTTAAAGCAATTG
CTTATATTGATACCATGCTCCTCTGCCCTCTGACAACTTTGAGTGTTATA
TCACAGTTAACAAAGACATCCTATCTGTAGGCCAATTTTTGCTATAAATA
ACTTTTCTGGTAAAAAGAATGGGAAGGAATTAGTGGGTAATGCACCTGGA
AAACCTAGCATCTTCCCCATGTCATGCATTACTCAAGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_n18.g1 MSMg01no402_n18.g1 CHROMAT_FILE:
MSMg01no402_n18.g1 PHD_FILE: MSMg01no402_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:55 2005
         (553 letters)



>mm_chr2_88971544_88972496
          Length = 953

 Score = 1038 bits (537), Expect = 0.0
 Identities = 549/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctaatttaatcttgtccactttatttctcctaatctttaatatacaactcagagaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 753 ttctaatttaatcttgtccactttatttctcctaatctttaatatacaactcagataggt 694

                                                                       
Query: 61  ttcaactaagtgtttgaaactctgaactgttttagtgctagtatatttctctttgaatgt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttcaactaaatgtttgaaactctgaactgttttagtgctagtatatttctctttgaatgt 634

                                                                       
Query: 121 aaactgaatcaccaagacatcatctgatatacaggacttaagaaaaagagaagagacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaactgaatcaccaagacatcatctgatatacaggacttaagaaaaagagaagagacctt 574

                                                                       
Query: 181 ttgttttcatttcagaaactctatgacaagccaaattgagacatttagggaaatctggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttgttttcatttcagaaactctatgacaagccaaattgagacatttagggaaatctggag 514

                                                                       
Query: 241 agtatcaattgggagaggaaaaaaaaaagaaactaatcttaagagtatgtatttcccaca 300
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agcaacaattgggagaggaaaaaaaaaagaaactaatcttaagagtatgtatttcccaca 454

                                                                       
Query: 301 ggatcatgaaaaggcattttcttagaaataaatacagaaaataatagtcttagattaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggatcatgaaaaggcattttcttagaaataaatacagaaaataatagtcttagattaaaa 394

                                                                       
Query: 361 atatgatggctttatggagtttaatatatagaacaattttaaataagattataatttact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atatgatggctttatggagtttaatatatagaacaattttaaataagattataatttact 334

                                                                       
Query: 421 gttatttgtaagacattatttatttatatgcaatatattttaaagcaattgcttatattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttatttgtaagacattatttatttatatgcaatatattttaaagcaattgcttatattg 274

                                                                       
Query: 481 ataccatgctcctctgccctctgacaactttgagtgttatatcacagttaacaaagacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ataccatgctcctctgccctctgacaactttgagtgttatatcacagttaacaaagacat 214

                        
Query: 541 cctatctgtaggc 553
           |||||||||||||
Sbjct: 213 cctatctgtaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |