BAC Information

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BAC

Clone NameMSMg01-403L07
Chromosome2 (Build37)
Map Location 84,441,044 - 84,441,473
singlet/doubletsinglet
Overlap geneCtnnd1
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763
Downstream gene2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403L07.T7 (MSMg01no403_l07.b1)MSMg01-403L07.TJ (MSMg01no403_l07.g1)
ACCAG502553AG502554
length758765
length of high quality
(start - end)
430 (62 - 491)228 (74 - 301)
definitionCHROMAT_FILE: MSMg01no403_l07.b1 PHD_FILE: MSMg01no403_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:05 2005CHROMAT_FILE: MSMg01no403_l07.g1 PHD_FILE: MSMg01no403_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTATTCCTCTTGTCCTGTTCCTTATATATTGAGGCTATGGGGTAGGA
GAAAAGTGCACAGCCCACCAACTCCTTTTCTTATACATTACAGTCACCCC
CTCCCCCCAACCTTTGCTTCCTTCCCATTTCTTCCTAGTCCCATTTCCCT
TTTCTGGCAAAAAGGAGCTCTGTGCTCTCTGTGACCCTCAGAGTACACTG
CACAGGGGAGCCTCCCCCACCCACATCTATCTGCCTCTGGTTTTGGGTTC
TCTTGTCCTCCTCTGCTCTTCCTGGTGCTCTTTCTTCTCGGTGGGGTGTG
GGTAATAGAATAGCCATGGGCTTTGGGGACCTTTAACTGTTTTTTTGTTT
GTTTTGCTTTGTTTTTCCTTTTTCATTTATAAAAACACTAAACATTCAAT
TTCAGCAAACCAAAAATCCTACCCTCCCACCGAATACTACTAAGGTGCAT
ATCTTCTGCTCTGTATCTTTTCCCTCTCTCTCTCTCTCGTTAATGCTTTT
AAAAACCAATGAGTCTTTTATACAAATAATAGCCTTTAACCCGTGTGTGT
GCGTACGCCCGCGTTATTTCCTTCCCTTCCGGTTGTCCCCTTTCCCTTCC
TTTCCTTCTTAATTACCTTTGGTGTCCCGGTCTTTTCTTCTATCCCCACC
AGCCTTTTTCCCCGTTATTTTGTCCTCCGCATGCCTTCACCTCCTCCTTT
CTGCCCCC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCATGACCAGGATATGGTAGCAAAG
GGGTCTGTGCCTTCCCACACTGAGGAAATAGCTCAGTTGTCTACATGGCT
CACCCCTCCCCCAAAGAGGCACCTACTGAACTGTGGGTACTGACAGAATG
GTCACAACATTTGACTAACACACAGTTTACTGATGGTACATCAAACACTG
ATGGGCCCAAAGCTAATGGAAAGTGGCAGCCTATAGACTGGGGAATGGAA
TGCACAGTCAGTGCATTTTTTTTGGCTGAGACAAACAACTAGGAAAGCAA
AAGGGAAATTTCTATCTTCTCCAATTCATGGCGTATGCAATGGCACATTT
ATATGGCCATCAAAATGCAAAACCATTAACTGGTATAAAAACGACAAAGA
TCTCGGGTCCTACCAGGCATGAATGGATATGGAAATGGCAAAACCTAGCT
ACACTTATCATAGACATTATCCTCCATGCTTCCCATTCCAGCTTGCCCGA
CTCCACATCTGACTATACTGTATCTGTGGACGCACTGTCTTCTTGTTTAA
TTAACACCCACAATATTATTCACCTTGCTTCCCTTACTAATTCTTATCTT
CTCTCCCCCCCCATTGTTTCTATCCCCCACCTTTGACTAACTTCTGTTTC
CCTCACCTTCTTACCACTCACCTTTTCCCACCGTTTTTCCTGGTACAATT
TCCCCTTTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_l07.b1 MSMg01no403_l07.b1 CHROMAT_FILE:
MSMg01no403_l07.b1 PHD_FILE: MSMg01no403_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:05 2005
         (430 letters)



>mm_chr2_84440844_84441673
          Length = 830

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%), Gaps = 2/431 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtcctgttcctt-atatattgaggctatggggtaggagaaaagtgcacagcccacca 59
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cttgtcctgttccttaatatattgaggctatggggtaggagaaaagtgcacagcccacca 571

                                                                       
Query: 60  actccttttcttatacattacagtcaccccctccccccaacctttgcttccttcccattt 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 actccttttcttatacattgcagtcaccccctccccccaacctttgcttccttcccattt 511

                                                                       
Query: 120 cttcctagtcccatttcccttttctggcaaaaaggagctctgtgctctctgtgaccctca 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cttcctagtcccgtttcccttttctggcaaaaaggagctctgtgctctctgtgaccctca 451

                                                                       
Query: 180 gagtacactgcacaggggagcctcccccacccacatctatctgcctctggttttgggttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gagtacactgcacaggggagcctcccccacccacatctatctgcctctggttttgggttc 391

                                                                       
Query: 240 tcttgtcctcctctgctcttcctggtgctctttcttctcggtggggtgtgggtaatagaa 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcttgtcctcttctgctcttcctggtgctctttcttctcggtggggtgtgggtaatagaa 331

                                                                       
Query: 300 tagccatgggctttggggacctttaactgtttttttgtttgttttgctttgtttttcctt 359
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 330 tagccatgggctttggggacctttaactgtttttttgtttg-tttgttttgtttttcctt 272

                                                                       
Query: 360 tttcatttataaaaacactaaacattcaatttcagcaaaccaaaaatcctaccctcccac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttcatttataaaaacactaaacattcaatttcagcaaaccaaaaatcctaccctcccac 212

                      
Query: 420 cgaatactact 430
           |||||||||||
Sbjct: 211 cgaatactact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)