Query= MSMg01no403_m01.b1 MSMg01no403_m01.b1 CHROMAT_FILE:
MSMg01no403_m01.b1 PHD_FILE: MSMg01no403_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
(280 letters)
>mm_chr2_34052564_34053243
Length = 680
Score = 456 bits (236), Expect = e-133
Identities = 265/276 (96%), Gaps = 4/276 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctgtaa--tattgcaaagaagaagcagtgcaatctccacgtctgcccagagac 61
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaattcctgtaactta--gtaaagaagaagcagtgcaatctccacgtctgcccagagac 420
Query: 62 gaccaatttaaaaagtggggaaaagacctcagtgatgccataaagtatacaagggtcagt 121
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 419 gaccaatttaaaaagtggggaaaagacctcagtgatgccataaagtatccaagggtcagt 360
Query: 122 cagatgaaagcatccccattctcagcagcgatctggggagtgtagttgaaaaactacagt 181
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 359 cagatgaaagcatccccgttctcagcagctatctggggagtgtagttgaaaaactacaga 300
Query: 182 gaagcagcattttacacttcatagactggtaaaaagtcaactcaaccatgcccagggttc 241
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 299 gaagcaacattttacacttcatagactggcaaaaagtcaactcaaccatgcccagggttc 240
Query: 242 taagcctgtgtgcagcagcagtgggggtgggggtgg 277
||||||||||||||||||||||||||||||||||||
Sbjct: 239 taagcctgtgtgcagcagcagtgggggtgggggtgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no403_m01.g1 MSMg01no403_m01.g1 CHROMAT_FILE:
MSMg01no403_m01.g1 PHD_FILE: MSMg01no403_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
(245 letters)
>mm_chr2_33870528_33871172
Length = 645
Score = 433 bits (224), Expect = e-126
Identities = 233/236 (98%)
Strand = Plus / Plus
Query: 1 aaaagcattgctgtaatctggttctagcaggctggaatgagctcactttgcagatgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcattgctgtaatctggttctagcaggctggaatgagctcactttgcagatgtgaa 260
Query: 61 gtgggaagaaattccacaaacgtttaaagtgactttttaaaagagaaaaacagattaaac 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gtgggaagaaattccacaaacgtttaaagtgactttttaaaagacaaaaacagattaaac 320
Query: 121 atcgggtcattctttcaaatataatggaacagacaaaacatctttttagagtgggtaatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 atcgggtcattctttcaaatataatggaacagacaaaacatctttttagagtgggtaact 380
Query: 181 gtaagagctgtcttggttttagagggaaatccaccgccttggatgtgaagaaaacc 236
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaagagctgtcttggttttagagggaaatccaccgccttggatgtgaagaaaacc 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
