BAC Information

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BAC

Clone NameMSMg01-404K18
Chromosome2 (Build37)
Map Location 112,526,232 - 112,526,701
singlet/doubletsinglet
Overlap geneRyr3
Upstream geneOlfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K18.T7 (MSMg01no404_k18.b1)MSMg01-404K18.TJ (MSMg01no404_k18.g1)
ACCAG503284AG503285
length753741
length of high quality
(start - end)		470 (63 - 532)519 (69 - 587)
definitionCHROMAT_FILE: MSMg01no404_k18.b1 PHD_FILE: MSMg01no404_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:25 2005CHROMAT_FILE: MSMg01no404_k18.g1 PHD_FILE: MSMg01no404_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATCTAATGCTGCTTCAGCTTTGACTTCAGCCTGGTCTTGGATCTAGATC
CTGTTCTGTGGGGCTTAAATAACGCACTCATCTTAGGTTCCACGTATAAC
CAGCAGCCTCTATTGCTGTTTCACACACAACGTGCCAGAAGAAGTTCCCG
TTGAACAGCAGCACCCTCATGCTTTGCAAATAAAGGGGTGCTTGTATACC
AAAAAATTGAAGTCTCAACAGTTGCCCAAAGCATTTGAGAGGTCCCCAAA
CAGACACTGCTCTGAATGGCTTTAAAATAGAAGTGTGTCCAGTACAGTCA
CACCGCAAAAGCACAAGTGTGCAAAGCTGCCTTCTGAAGGGTTGGGAGGA
AATGACCTTGCCTTTACACCTCCTCAGCATGCACACTGGCTACACGCTTG
TTTTCTTTCTGTCTGAAATGCCAGCATCTGTTTTATTCCAGATGTGCTGA
CCTCTTAATGCCTATGTTCATTTTTCCATGACATTTGCCCTCAGAAAGCC
AAACGTCTGTTCATCTCCCTGCAGGAGATATTTTAAAGAGGGNCTGTCAC
TCTCCTGTCTAGGGGAGAAGCTGAGCTATATGAAGGAAAGTGAACTTGGT
TCTCATTTCTCAGTCGGGTCTATACAAAGAAGGTTCATTTGTCTTGACTG
GAGAAAATTGGTAAACAATGCTTTTTCTTCGGGGCCAAAAAAGGCCAAGA
CCN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTCTGTAGATCACTCTAGATATTACGTATTT
TTGAACATATTAGTTCTTTCATCCATGAACACCGGAAGGCTGAATGAAAG
CTTGTAATTTAGTGTCTTCTCCAAGTGCTTTCATTGGTGTTTTGTAATTA
TCATTGTCGATATGAATCACTTCTTTGGTTAAATTTATTTGTATATATTT
CATCTAAATTTTTTGTTGCTATTGTTTTTTGATTTATTCTTCACTTTCAC
CAAGTTAATTTTGTATTCTGTAACTTTTCTTAATTTATCAGTTTTAAAGC
TTTTTGGTGGCATTGTTTTATATATATATTATGCATCATATATGTATAAT
TATATGAGTAATTATATAATATACAAAATATACATAACTAATGTCACTTT
CCAGCAGGGGTAACTTAACCCCTCATTTTCTGTTTGCATGCCTTTCTTTT
GTGTTTCCTCTCACTGAGACTTTTGGAGACAGGATCTTACTATGTAGCCC
TGGCTGTCCTGAAACTCACTATGTCAAGCAAGCCGGCTTCAACTCAGAGA
GATCTCCTGTCTCTACTTCCCAAGTGCTGAAATTCAAGGAGAGTGCTGCT
GCCGTCACCACAACTGGGCACAGACTTTAATCTTTGTCTGAATGAAGATG
TGAAAGGCAAACTTGGCCCTTTTTTGAAAATATATTTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k18.b1 MSMg01no404_k18.b1 CHROMAT_FILE:
MSMg01no404_k18.b1 PHD_FILE: MSMg01no404_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:25 2005
         (470 letters)



>mm_chr2_112526032_112526901
          Length = 870

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagctttgacttcagcctggtcttggatctagatcctgttctgtggggcttaaataa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cttcagctttgacttcagccttgtcttggatctagatcctgttctgtggggcttaaataa 611

                                                                       
Query: 61  cgcactcatcttaggttccacgtataaccagcagcctctattgctgtttcacacacaacg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cacactcatcttaggttccacgtataaccagcagcctctattgctgtttcacacacaacg 551

                                                                       
Query: 121 tgccagaagaagttcccgttgaacagcagcaccctcatgctttgcaaataaaggggtgct 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 550 tgccagaagaagttcccgttgaacagcagcatcctcatgctttgcaaataaaggggtgct 491

                                                                       
Query: 181 tgtataccaaaaaattgaagtctcaacagttgcccaaagcatttgagaggtccccaaaca 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 490 tgtataccaaaaaattgaagtctcaacagttgcccaaggcatttgagaggtccccaaaca 431

                                                                       
Query: 241 gacactgctctgaatggctttaaaatagaagtgtgtccagtacagtcacaccgcaaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gacactgctctgaatggctttaaaatagaagtgtgtccagtacagtcacaccgcaaaagc 371

                                                                       
Query: 301 acaagtgtgcaaagctgccttctgaagggttgggaggaaatgaccttgcctttacacctc 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 370 acaagtgtgcaaagctgccttctgaagggtcgggaggaaatgaccttgcctttacacctc 311

                                                                       
Query: 361 ctcagcatgcacactggctacacgcttgttttctttctgtctgaaatgccagcatctgtt 420
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 310 ctcagcatgcaccctggctacacgcttgttttctttctgtttgaaatgccagcatctgtt 251

                                                             
Query: 421 ttattccagatgtgctgacctcttaatgcctatgttcatttttccatgac 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttattccagatgtgctgacctcttaatgcctatgttcatttttccatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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