BAC Information

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BAC

Clone NameMSMg01-404M19
Chromosome2 (Build37)
Map Location 10,177,209 - 10,345,593
singlet/doubletdoublet
Overlap geneItih5, Sfmbt2
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404M19.T7 (MSMg01no404_m19.b1)MSMg01-404M19.TJ (MSMg01no404_m19.g1)
ACCAG503382AG503383
length752756
length of high quality
(start - end)		259 (317 - 575)471 (67 - 537)
definitionCHROMAT_FILE: MSMg01no404_m19.b1 PHD_FILE: MSMg01no404_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:35 2005CHROMAT_FILE: MSMg01no404_m19.g1 PHD_FILE: MSMg01no404_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,177,209 - 10,177,467)(10,345,123 - 10,345,593)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCTAGACGATCCGCGGAATTCATATG
TTAACTTTTCACAAAATGTTTAGTTAATAATAATCAGGGAGGCTGGTTGA
TAAAGCATTCTCTTGCAAGCACAAGAAACTGAGTTGAGCCACCAGAACTC
AAAAAAGTCAGGTGTGGGTGATGCGCTTTCCATTCCCAGTACTGAGGAGG
CTGAGGCAGGCTGATCCCTGGCGCTCGCTGGCCAGTCAGTTTAGTGTCCT
TAGTGAATCTCAGGCCAGTGAAACAATCTGTTCAAAAACAAAAAGAGGAT
GTCATCTGAGTTTTGGAAACCAAGGTTATCTTCTGGCCTCCACATGTGCA
TGAACACGTGGACATATATGTGTACCTACACGTATGAACACACATACACA
CAAACACAAAAAAGATATAAGAGACACAAAGTTGCTCCTCTTTGTCATAT
AAGAGCATTAAAAAAGGTTGCTGTGTAGAAGCCAGGAGCCACACACCAGA
TCTGTGCCTTGATCCAGATCATCTCAATCTCTGAAACTGTAAGTAATAAG
TGCATTTTGGTTAAACTGCCCAGTTTAAAATATTCTTCATAAAGCAACCC
AGCCTTGCTGAGATAAAGAGAGTCTCCACAACATGAGGTTCCACCTTTAT
TTCGGCTACCCAGAATATACAAAAGCAATGCTGTTGTTAGATCTGAAAGA
AGCCTACCAGGCCTAATGACGTTGGCCCACCTAAATAAAACTGCAAATTT
CN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCCCTAGAGATCAGGACTTCTCTGGGGTTTCC
CTTCAGAAGCCAGTTTGCACATCTGATGGTTAATCTTCATTGTCCACCTG
GCTGCATTTAGAATCATCTAGGCGGCACACCTAAGAGTGTCTTCTTTACT
TGACATAAGCCTTTGGGAAAGCAAGCAAGCATGCTCCAGGGAGGCAGCTT
GGTATCTGGGTATCTTATGCAATTGGTAGAGTCTCGACTATCTGCTTGTG
GTAACCTCATGGTGTGTTTGCCTTGACATCGTTGTTCTATCTTTTCCTAG
CACATAAAGCATAGGGATGAAACTGCAGAGAGGAAGGGACAGGGAGGAAG
ACAGAGAAGAGCTGGGAAAGTGGTTAAAGAGCTCGCCCCAGATGGATGAG
GATCAGACTCAGGTCCCCAGCACCTGAGTAGTAACTGGGTACGTGTGGGG
GCTCATCTGTAATCCCAGAACTCAGAAGCCCCAGACCGGGGATCTCAGAG
GCAAGCTGTGGAGCTGTGTGAGCCAAGACGAGCAAGCTCCAAGTTCAGTG
AGAGAATCTGCCTCGGATTCCCGCATGGAGAGCAATCTAGGACCACCCTT
TGAGTTTTACTTCCCTACGCTCCCGTAGACCTCTAATACTATCCGGCGGT
TTACCCCCTGTTGAATAGCCGATACAATAATCGAAACTAAAACAGGTCTT
GTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_m19.b1 MSMg01no404_m19.b1 CHROMAT_FILE:
MSMg01no404_m19.b1 PHD_FILE: MSMg01no404_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:35 2005
         (259 letters)



>mm_chr2_10177009_10177667
          Length = 659

 Score =  485 bits (251), Expect = e-142
 Identities = 257/259 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccaaggttatcttctggcctccacatgtgcatgaacacgtggacatatatgtgtacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccaaggttatcttctggcctccacatgtgcatgaacacgtggacatatatgtgtacc 260

                                                                       
Query: 61  tacacgtatgaacacacatacacacaaacacaaaaaagatataagagacacaaagttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacgtatgaacacacatacacacaaacacaaaaaagatataagagacacaaagttgct 320

                                                                       
Query: 121 cctctttgtcatataagagcattaaaaaaggttgctgtgtagaagccaggagccacacac 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cctctttgtcatataagagcattaaaaaaggtggctgtgtagaagccaggagccacacac 380

                                                                       
Query: 181 cagatctgtgccttgatccagatcatctcaatctctgaaactgtaagtaataagtgcatt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 cagatctgtgccttgatccagatcatctcagtctctgaaactgtaagtaataagtgcatt 440

                              
Query: 241 ttggttaaactgcccagtt 259
           |||||||||||||||||||
Sbjct: 441 ttggttaaactgcccagtt 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no404_m19.g1 MSMg01no404_m19.g1 CHROMAT_FILE:
MSMg01no404_m19.g1 PHD_FILE: MSMg01no404_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:35 2005
         (471 letters)



>mm_chr2_10344928_10345798
          Length = 871

 Score =  833 bits (431), Expect = 0.0
 Identities = 461/471 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccctagagatcaggacttctctggggtttcccttcagaagccagtttgcacatctga 60
           ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctccttagagataaggatttctctggggtttcccttcagaagccagtttgcacatctga 607

                                                                       
Query: 61  tggttaatcttcattgtccacctggctgcatttagaatcatctaggcggcacacctaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tggttaatcttcattgtccacctggctgcatttagaatcatctaggcggcacacctaaga 547

                                                                       
Query: 121 gtgtcttctttacttgacataagcctttgggaaagcaagcaagcatgctccagggaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 546 gtgtcttctttacttgacataagcctttgggaaagcaagcaagcatgctgcagggaggca 487

                                                                       
Query: 181 gcttggtatctgggtatcttatgcaattggtagagtctcgactatctgcttgtggtaacc 240
           ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 486 gcttggtgtctgggtatcttatgcaattggtagagtctcaactatctgcttgtggtaacc 427

                                                                       
Query: 241 tcatggtgtgtttgccttgacatcgttgttctatcttttcctagcacataaagcataggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcatggtgtgtttgccttgacatcgttgttctatcttttcctagcacataaagcataggg 367

                                                                       
Query: 301 atgaaactgcagagaggaagggacagggaggaagacagagaagagctgggaaagtggtta 360
           ||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 366 atgaacctgcagagaggaagggacagggagggaggcagagcagagctgggaaagtggtta 307

                                                                       
Query: 361 aagagctcgccccagatggatgaggatcagactcaggtccccagcacctgagtagtaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aagagctcgccccagatggatgaggatcagactcaggtccccagcacctgagtagtaact 247

                                                              
Query: 421 gggtacgtgtgggggctcatctgtaatcccagaactcagaagccccagacc 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gggtacgtgtgggggctcatctgtaatcccagaactcagaagccccagacc 196


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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