Query= MSMg01no404_n05.b1 MSMg01no404_n05.b1 CHROMAT_FILE:
MSMg01no404_n05.b1 PHD_FILE: MSMg01no404_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:37 2005
(474 letters)
>mm_chr2_57998836_57999709
Length = 874
Score = 872 bits (451), Expect = 0.0
Identities = 468/474 (98%)
Strand = Plus / Plus
Query: 1 ccccaggcacttcatctatataaaggaataaacctggactgacaaagagtctgtgaagaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaggtacttcatctatataaaggaataaacctggactgacaaagagtctgtgaagaa 260
Query: 61 aaatttattaggtaatgttgaaaccacccaactctggactaaatccaaacaccctggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttattaggtaatgttgaaaccacccaactctggactaaatccaaacaccctggaac 320
Query: 121 agcaatgcatctcataatctgatgcttggccaacggtgacttcaccactcatacagtctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaatgcatctcataatctgatgcttggccaacggtgacttcaccactcatacagtctc 380
Query: 181 gctaatccaccagcctggttcagttcatccttaggatatgccaaatccatttccaggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaatccaccagcctggttcagttcatccttaggatatgccaaatccatttccaggcct 440
Query: 241 caaagatatttttctttacgtccatgttcccacgaggagttcaaatggccattctttccc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 caaagatatttttctttacgtccatgttcccacgaggagttcaaatggccattccttccc 500
Query: 301 tctggtctcagctccaacagtacttcctcagaatgaatggagcactttgaacatctcagc 360
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 501 tctggtctcagctccaacagtacttcctcagagtgaatggagcaccttgaacatctcagc 560
Query: 361 tcaactggctactgttttcctcagtagactcccctgtgacactatctacttttcctatag 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaactggctactgtcttcctcagtagactcccctgtgacactatctacttttcctatag 620
Query: 421 tggntatcaataactgtaatttttgaaatttcaggcttttcttagaaatcttct 474
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggttatcaataactgtaatttttgaaatttcaggcttttcttagaaatcttct 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_n05.g1 MSMg01no404_n05.g1 CHROMAT_FILE:
MSMg01no404_n05.g1 PHD_FILE: MSMg01no404_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:37 2005
(505 letters)
>mm_chr2_58202668_58203572
Length = 905
Score = 930 bits (481), Expect = 0.0
Identities = 500/507 (98%), Gaps = 2/507 (0%)
Strand = Plus / Minus
Query: 1 atggctgaatcattcagtatgactcaagagcttgcttattattttttaaaacaatttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atggctgaatcattcagtatgactcaagagcttgcttattattttttaaaacaatttaaa 493
Query: 61 tttgcaatgacttatacgtcccaaattagagcaatctagtttttcattaaacttttcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttgcaatgacttatacgtcccaaattagagcaatctagtttttcattaaacttttcaca 433
Query: 121 tagaaataccattggaatgctcaaaatttgaaggtgaactgcagccccctcccaagtccg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 432 tagaaataccattggaatgctcaaaatttgaaggtgaactgcagccccctcccaagtctg 373
Query: 181 tttcgtcatcttaatttcatggcaaggcacaaggacagtgataggtgccacatctctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttcgtcatcttaatttcatggcaaggcacaaggacagtgataggtgccacatctctgtg 313
Query: 241 tgctgatttttagttttgaacaacttcatgactgatttaaagaaagatttgtgagtgtgt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgctgattaaaagttttgaacaacttcatgactgatttaaagaaagatttgtgagtgtgt 253
Query: 301 gtgtatgtgtgtg--tgtgtgtgtggtcaaaaataggacaagacaaaatctagcccatca 358
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtgtatgtgtgtgtatgtgtgtgtggtcaaaaataggacaagacaaaatctagcccatca 193
Query: 359 ggacctgggaaatggtaattctattgcaaaatgtttcatacatgcatgcttatccaaaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggacctgggaaatggtaattctattgcaaaatgtttcatacatgcatgcttatccaaaag 133
Query: 419 atggtaattgagagagtggtaatccagattagaatggctatttttttttttttataaaac 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 132 atggtaattgagagagtggtaatccagattagaatggttatttttttttttttataaaac 73
Query: 479 aggctgttttaaaacagagccagaata 505
|||||||||||||||||||||||||||
Sbjct: 72 aggctgttttaaaacagagccagaata 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
