BAC Information

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BAC

Clone NameMSMg01-404P13
Chromosome2 (Build37)
Map Location 35,556,203 - 35,556,411
singlet/doubletsinglet
Overlap geneDab2ip
Upstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P13.T7 (MSMg01no404_p13.b1)MSMg01-404P13.TJ (MSMg01no404_p13.g1)
ACCAG503512AG503513
length747758
length of high quality
(start - end)
209 (316 - 524)536 (64 - 599)
definitionCHROMAT_FILE: MSMg01no404_p13.b1 PHD_FILE: MSMg01no404_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005CHROMAT_FILE: MSMg01no404_p13.g1 PHD_FILE: MSMg01no404_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCCTATTTCAAGACATCCGCGGAATTCAGCTGCTTG
CTGACAGCCTGGGNCCTGGGATAACAAACAACACCCTAAAAAGGCAGAGG
GGTTGGCCAGTCAGCCTGGGGAATTTCCTGGGAAGAAAGCCTGGAAGAAA
TTGTCCCTCTCAGGCCTGGGTTCTTCTAGCCCAGGACTTGAAGTAGTAGT
CATCAGGAACCTCCCTTTAGATACGTACTGGGCCCTGGCCTTCTGCTTCC
ACACTACTCCTAAGATCTCCTCACCACGGGGCTGAGAATGTAAAGAGAAC
GCAACTCTTTTTTTGACAGTCCATGACTGGCTACAAAGCAACTAAGGTCG
GGCACCAACAGTGTCCAAAGGATGCTGACATGCTTATCCCAGTACACATA
TCATCTCACAACCTTCTCCAACAACCACACACAGAAGGTGGCTTCCTAAG
CAGACAGCACAGCAGGGCTTCAAACAGGCCCAGTGAGCCCAAGCTCAGTG
GTAACTGCCACACACCAAGACTCATACAAGGCATGGCTTCTCAAGTCCAA
ACAGAAAGCTGTGAAAGTGGCGGTCTAGTCACCCTGTCAGCCCAATGTCT
GTACCTCCCATCCCACACAGCAAGGCTTAGAACCCGGCCCAAGACCTCTG
TTTTCCCTTTTTAATTCACCCCTAAATGATCTGAGTCCTCAGGTCAATCA
TTTTTTCCTCAGGGCCCTACAACCCCTAACTTGGTTTCTTCTCCGGC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGCCAGCCTGGGCTACACAGTGAATTCCAGGCTAG
CCTGGGCTACAGAGGAGGATCATTTCATTCAGAAAAAAATAAAATAAAAT
AAAATAAAAAATAAAGCTTATCTTTAGGGGAAGAGGCTCACAAGGCCCCA
CCTGTCTCTGAGGACGGGTAGTAAGTTAATGGTTGCTGATGGAGGCAGAA
CACTTTGTCCTTTGGTGTAGTCACTGCTAAGGCAGACATGATTCTGTAAG
TAACCCTGATTATTCTTACTGGTACACCAACAGAAATCAATATGAAAGTT
GAATGGGGGACAAGTTGAGAAAACAAAGGAGATGGTGGGGGACTCCATAG
TTAAGAGTACTGGCTGCTCTCAGGGGACTCTGGGTTCACTTCCCAGTCCC
ACATGATCAACTGCAACTCCAGGTTTGGGGGAATCTTGTGCTCACTTCCG
GCCTCCGTGAGTACCAGGCACACACATGGTACAAAGACAGACATGCTAGC
AAAACACCCATACGCATACACAAATTTTTCATTAAAAAAATTAAACTAAA
GCCAGACATGGTGGCACATACCTTTAATTCTAGCACCAGGGAGGCAGAAT
CAGGAGGTTCCCAAATTCGAGGGCAGCCTGGACTCCATGTGAATGGCACA
AGGCTCTCCTGCTCACAGATAAACACTGGAAGAAACACAAATGTTAATTC
TGAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p13.b1 MSMg01no404_p13.b1 CHROMAT_FILE:
MSMg01no404_p13.b1 PHD_FILE: MSMg01no404_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:49 2005
         (209 letters)



>mm_chr2_35556003_35556611
          Length = 609

 Score =  397 bits (205), Expect = e-115
 Identities = 208/209 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtccatgactggctacaaagcaactaaggtcgggcaccaacagtgtccaaaggatgc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 409 acagtccatgactggctacaaagcaactaaggccgggcaccaacagtgtccaaaggatgc 350

                                                                       
Query: 61  tgacatgcttatcccagtacacatatcatctcacaaccttctccaacaaccacacacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgacatgcttatcccagtacacatatcatctcacaaccttctccaacaaccacacacaga 290

                                                                       
Query: 121 aggtggcttcctaagcagacagcacagcagggcttcaaacaggcccagtgagcccaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aggtggcttcctaagcagacagcacagcagggcttcaaacaggcccagtgagcccaagct 230

                                        
Query: 181 cagtggtaactgccacacaccaagactca 209
           |||||||||||||||||||||||||||||
Sbjct: 229 cagtggtaactgccacacaccaagactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)