NNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGCAGC
CGCGGAATTCTTCAGATTGCTCAGACTTCCAGGAAGTCTTTCCGGGAAGA
GATGAACGAGCCAGGGAGGAAGCAATGCCATCTGAGTATGAGGAAGCCGT
CCATACAGACATTTGCACTGTCAAATACTCTGTGTACAGACCAAAGTCCC
TAAAGTAAGAGGGTAAACTGTGTGTGTGACCCAGAAAGCCTTCTTGATGA
GCTGAGGATATAGGTTGAATGTAACCATGTGGATTCAAATTCCTCTCCAT
TGTCTTGCTGCCTCTCAAGCGCATAGCTTATTCCACGCTGAATGTGGTCA
CGCTGGACAGCGTTACAGTGAGTGGGATCACAGTATTTTCCAGAATGTAC
TGTAGATGCTGCTCCTGGAATCAACCACAAAGCCCTGTTTTACAATAACG
CATGAAAACTGCCTGAACCAAACACATTAAAAATAAATAAATAAAAGTGA
TGTTAGTCTTCAATATTTCCACTACTGAAGATGCCCAGTTTGCTTGGGCT
CACTGGGTCCTGGAGATTCCTGCTGATGCCTCTTCCAGATGCTGGCATTA
ATGGACACACAGCTTAACTTTAGCTAAAGGTCCCTTTCAATTCTTCCTCT
GAATTTTTTTTTTTTTTGTACTAAACCCCATGCTTTTGTGAGGGCCCCAA
GTCCCCAGAAATTTGGTCATCCTCTCCGGCAAAAATGACAAAATATTGAG
GCG

CCCCTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTCTTAGTAGCTCTTCA
AGGTGAATGAGGTGTCAGTATAACTGAGGAGAAAAATGAAGCTTACTGAG
ACTGTGTCCTACCTAATAAGGGCACACAGTCATGTGGGAGAGATTTAGGG
GTTTACCTCTGAAGCCCACCTCCGGTCTGAAGGATCAGCTGTTCTGGAGC
AGGACCATGCACCTTTCTCTTATGCATGCTCTGTGCTGAGCTTCATGGCA
GGAGTTAGAAGGAGAGAACACAGTCTTGGAAAAGCATTAGACCTCTTTCT
CCTAGAAGCAGAGCTGCCTTTTTTGGTGAGTCCAGCCTTCTGTACCACTT
TCTGCAGTCTGTGTGTGTTCCCACACCAGTGGGGAACAGCTAAAGCTTCC
GTCTTCATAATAACATTGGGCACATAGAACAATGTTAACCCTCCCATGAA
GGAGGGTTCTTTCTTGAACTTCCTACCATTCTTCCTTCCTTCCTTCTTCC
ATTCTTCCCTTTCTTCCTTCTTTCCTTCCTTCCTTCCTTCTTTCCCTCCT
TCCTTCCTTTCTTCCTTCCTTTCCCTCCTTCTTTCCTTCCTTCTTCCCTT
CTTTCCCTTCTTCCTTTCTTCTCTTCCTCCCCTTCTTCCCCTTACCTTTC
CTCTTTTCCCTTCTCTCCCCTTTCTTCCTTTCCTTCCGTCTCTGTCCTCT
CCGTCCC

Query= MSMg01no405_k10.b1 MSMg01no405_k10.b1 CHROMAT_FILE:
MSMg01no405_k10.b1 PHD_FILE: MSMg01no405_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:42 2005
         (244 letters)



>mm_chr2_43566253_43566896
          Length = 644

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagtctttccgggaagagatgaacgagccagggaggaagcaatgccatctgagtatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ggaagtctttccgggaagagatgaacgagccagggaggaagcaatgccatccgagtatga 260

                                                                       
Query: 61  ggaagccgtccatacagacatttgcactgtcaaatactctgtgtacagaccaaagtccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagccgtccatacagacatttgcactgtcaaatactctgtgtacagaccaaagtccct 320

                                                                       
Query: 121 aaagtaagagggtaaactgtgtgtgtgacccagaaagccttcttgatgagctgaggatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaagtaagagggtaaactgtgtgtgtgacccagaaagccttcttgatgagctgaggacat 380

                                                                       
Query: 181 aggttgaatgtaaccatgtggattcaaattcctctccattgtcttgctgcctctcaagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttgaatgtaaccatgtggattcaaattcctctccattgtcttgctgcctctcaagcg 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no405_k10.g1 MSMg01no405_k10.g1 CHROMAT_FILE:
MSMg01no405_k10.g1 PHD_FILE: MSMg01no405_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:42 2005
         (481 letters)



>mm_chr2_43707418_43708298
          Length = 881

 Score =  899 bits (465), Expect = 0.0
 Identities = 477/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctcttagtagctcttcaaggtgaatgaggtgtcagtataactgaggagaaaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 attcctcttagtagctcttcaaggtgaatgaggtgtcagtataactgaggagaaaaatga 580

                                                                       
Query: 61  agcttactgagactgtgtcctacctaataagggcacacagtcatgtgggagagatttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agcttactgagactgtgtcctacctaataagggcacacagtcatgtgggagagatttagg 520

                                                                       
Query: 121 ggtttacctctgaagcccacctccggtctgaaggatcagctgttctggagcaggaccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggtttacctctgaagcccacctccggtctgaaggatcagctgttctggagcaggaccatg 460

                                                                       
Query: 181 cacctttctcttatgcatgctctgtgctgagcttcatggcaggagttagaaggagagaac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 459 cacctttctcttatgcatgctctctgctgagcttcatggcaggagttagaaggagagaac 400

                                                                       
Query: 241 acagtcttggaaaagcattagacctctttctcctagaagcagagctgccttttttggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acagtcttggaaaagcattagacctctttctcctagaagcagagctgccttttttggtga 340

                                                                       
Query: 301 gtccagccttctgtaccactttctgcagtctgtgtgtgttcccacaccagtggggaacag 360
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 339 gtccagccttctgtaccactttctgcagtctctgtgtgttcctacaccagtggggaacag 280

                                                                       
Query: 361 ctaaagcttccgtcttcataataacattgggcacatagaacaatgttaaccctcccatga 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctaaagcttctgtcttcataataacattgggcacatagaacaatgttaaccctcccatga 220

                                                                       
Query: 421 aggagggttctttcttgaacttcctaccattcttccttccttccttcttccattcttccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aggagggttctttcttgaacttcctaccattcttccttccttccttcttccattcttccc 160

            
Query: 481 t 481
           |
Sbjct: 159 t 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)