Query= MSMg01no405_l13.b1 MSMg01no405_l13.b1 CHROMAT_FILE:
MSMg01no405_l13.b1 PHD_FILE: MSMg01no405_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:47 2005
(250 letters)
>mm_chr2_40547418_40548069
Length = 652
Score = 433 bits (224), Expect = e-126
Identities = 243/250 (97%), Gaps = 2/250 (0%)
Strand = Plus / Plus
Query: 1 aagaagatttatgccaacaccctccaaattgttagataaattataaattgaaggaatatt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aagaagatttatgccaacaccctccaaattgttaaataaattataaattgaaggaatatt 260
Query: 61 tcacaaaatattttacgaggtcacatattcatagactccaagaatttgggaataaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaaaatattttacgaggtcacatattcatagactccaagaatttgggaataaaggaa 320
Query: 121 aggactaataagggacacatttt--tttttctgggaatgaggaaaggaaaaaatttttta 178
||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||
Sbjct: 321 aggactaataagggacacattttcttttttctgggaatgaagaaaggaaaaaaaaattta 380
Query: 179 gggagaatggaagtatgaggtagaggaacaggaggatcaggtcatgagtggagaggtggg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagaatggaagtatgaggtagaggaacaggaggatcaggtcatgagtggagaggtggg 440
Query: 239 agaggagatg 248
||||||||||
Sbjct: 441 agaggagatg 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 652
Length adjustment: 9
Effective length of query: 241
Effective length of database: 643
Effective search space: 154963
Effective search space used: 154963
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_l13.g1 MSMg01no405_l13.g1 CHROMAT_FILE:
MSMg01no405_l13.g1 PHD_FILE: MSMg01no405_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:47 2005
(463 letters)
>mm_chr2_40681327_40682191
Length = 865
Score = 833 bits (431), Expect = 0.0
Identities = 455/464 (98%), Gaps = 4/464 (0%)
Strand = Plus / Minus
Query: 1 atagacaatgccaatgccattgaatattgaataaaaacaactatagtaaggactttaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atagacaatgccaatgccattgaatattgaataaaaacaactatagtaaggactttaaac 604
Query: 61 atatactaatcactcattaaactacaaccaatctatcatttccatttttctttctttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atatactaatcactcattaaactacaaccaatctatcatttccatttttctttctttttt 544
Query: 121 gtgtgccctttanatactgaagataagacattccttaagttacttctctgattgctttcc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gtgtgccctttaaatactgaagataagacattccttaagttacttctctgattgctttcc 484
Query: 181 tattaagtcataaaatcatggataatattcatgttacatttgtatttaaattatagatac 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 tattaagtcataaaatcatggataatattcatgttacatttgtacttaaattatagatac 424
Query: 241 atagttttgagaaaatattggtattgttgcccctaaatccttccatattgctttggtagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atagttttgagaaaatattggtattgttgcccctaaatccttccatattgctttggtagt 364
Query: 301 gtttgttcagtgttcctcttacaccttctcattccgagaagatagtttttcagcgaaatt 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 363 gtttgttcagtgttcctcttacaccttctcattctgagaagatagtttttcagctaaatt 304
Query: 361 agttgcctaatttcattgtaaaacatctttcttaatgctctgaa--gtgtgtgtgtgtca 418
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 303 agttgtctaatttcattgtaaaacatctttcttaatgctctgaagtgtgtgtgtgtgtca 244
Query: 419 t-gcttaaagatattttacatttatatacatgcatatttaatgt 461
| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tag-ttaaagatattttacatttatatacatgcatatttaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 865
Length adjustment: 10
Effective length of query: 453
Effective length of database: 855
Effective search space: 387315
Effective search space used: 387315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
