BAC Information

Click to search

BAC

Clone NameMSMg01-405M12
Chromosome2 (Build37)
Map Location 121,782,029 - 121,953,595
singlet/doubletdoublet
Overlap geneCtdspl2, Eif3s1, 4930424G05Rik
Upstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3
Downstream geneB2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405M12.T7 (MSMg01no405_m12.b1)MSMg01-405M12.TJ (MSMg01no405_m12.g1)
ACCAG504131AG504132
length753798
length of high quality
(start - end)
243 (79 - 321)263 (80 - 342)
definitionCHROMAT_FILE: MSMg01no405_m12.b1 PHD_FILE: MSMg01no405_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:52 2005CHROMAT_FILE: MSMg01no405_m12.g1 PHD_FILE: MSMg01no405_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,782,029 - 121,782,269)(121,953,333 - 121,953,595)
sequence
NGGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGTATCGGG
GCGCGGAATTCGCTCTTGACAAAAACTAAGGCGGCAGAAACTTCAGCCTC
TTCACGGTAGTAAAAGTTGGTTTCCCCTCCCCCGCTGCCGCCCAGGCCTC
CCGCATTCCTTCCCTCCCGCCTCTCCGGATCGGGGCGGGCGGGGGAGGAG
GGAGCCAGAGCGCCTGCGCAGGGAGGCCGCTTTCCATCCGGGTCCCTGTC
CGTGTTTTGCAGCAGGTCGGTAGGCGGGAAATGGCGACTGGCTGAAGGAG
CTGGTTCTGTTGCTGCTGATGGATAGTGTGAAAGAACCACCTATTGCGCA
GNCGGGACCATCGTCGGAGCCCGAAGACACTTTTCTGTCGTCACAGTGAA
GGTAATTCCCTTGGTCCAGACGCTGCCGTTGCTCCGAAGCTCAGTCCTCT
CTCAGGGCCGNCTGCCGGGATCTCCTCCCCTTCTCTAGCCGAGCCCTCAT
CGGTTCCAGTCACGCTCGTATGCCTGCACTGTTGTCGCCCCGCACCACCA
CTGTCGTGTAACCTGTTCTGGCCCTGTACTTTCTCCTTGTGAACGCTCTG
GGGAGCCCACTTGCCGTGCAGTTTTTGTCCCCAAGTCGGCGGCCTGTGAA
CGGTCTTTTTTTTTTTTATACATTCCATTGTGCGCGTGCACACCGACCTC
TTTGTTCCTGGCCTGTAAGTTCGTGTGTGTTTGAGCCGTCGTTTATTCCC
TAT
CCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTTAAAGCACATGACCAG
TGGAGAAAGACAAAGCCTTCCCAGTATAAGTGAGGTGACTTAACCCCCCT
GCAGCCTATTCCTAAACTGTTAATCATCATCTCAGGAAGGAGGGGGATCC
TGACCTTTTTAGCCTTGAGGATAAAGGAGAGGACCATGCAGTTACTGTCC
TGGCTGTTGAAATGATTGGCTTTTGATGCCCTAACCTTGTTTCTGTGGAA
ACAAAACGAGAAGACAGTGTGTTGTGTGTGTGTGTGTGTGGCTTGNNTTT
TTTTCTTTTTTTTTTTTTCTCCCCTTCTCTCTTCCCCCCCCTTCTTTTTT
TTTTCCCTTCTTTTTTCCTTTTTTCCCCCCTTTCTTTTCCTCCTTCCTCT
TTTCTCGTCTTTCCTTTCCCCCTTTTTCTCCCTTCTTTTCCTCTTTTTCC
CTTTTTCCTTTCTCTGTCTTTTCCCCCCTCCCCCATATTCCTTCCCTTTT
TTTCTNCTCATCTCTCTTCTCTATTTTTTTTTTCTTTCCACCCTTTTCTT
TATTTCCTCTTTTTTACCCCCCCTTCTATTTTCCCCCTTTTTCCCTTTTT
TTTTTTTCACACCTTTTTCTTCCTCCTTTTTTCCTTTTTTTCTTTCTTTC
TTCTCTTTATATTTCTCCCCCTTTCTTTTCCCCCTTTTCTCTCCCTCTCC
CTTTTTTTCTCCTTCTTTTTTTGGTTTCCCTTATTTTTTCTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_m12.b1 MSMg01no405_m12.b1 CHROMAT_FILE:
MSMg01no405_m12.b1 PHD_FILE: MSMg01no405_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:52 2005
         (243 letters)



>mm_chr2_121781829_121782471
          Length = 643

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcggcagaaacttcagcctcttcacggtagtaaaagttggtttcccctcccccgctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcggcagaaacttcagcctcttcacggtagtaaaagttggtttcccctcccccgctgc 260

                                                                       
Query: 61  cgcccaggcctcccgcattccttccctcccgcctctccggatcggggcgggcgggggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcccaggcctcccgcattccttccctcccgcctctccggatcggggcgggcgggggagg 320

                                                                       
Query: 121 agggagccagagcgcctgcgcagggaggccgctttccatccgggtccctgtccgtgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 321 agggagccagagcgcctgcgcagggaggccgctttccatccgggtccctgtccgtgcggt 380

                                                                       
Query: 181 gcagcaggtcggtaggcgggaaatggcgactggctgaaggagctggttctgttgctgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcaggtcggtaggcgggaaatggcgactggctgaaggagctggttctgttgctgctg 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no405_m12.g1 MSMg01no405_m12.g1 CHROMAT_FILE:
MSMg01no405_m12.g1 PHD_FILE: MSMg01no405_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:52 2005
         (263 letters)



>mm_chr2_121953133_121953796
          Length = 664

 Score =  493 bits (255), Expect = e-144
 Identities = 261/263 (99%), Gaps = 1/263 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccttaaag-cacatgaccagtggagaaagacaaagccttcccagtataagtgaggtga 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcccttaaagtcacatgaccagtggagaaagacaaagccttcccagtataagtgaggtga 404

                                                                       
Query: 60  cttaacccccctgcagcctattcctaaactgttaatcatcatctcaggaaggagggggat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttaacccccctgcagcctattcctaaactgttaatcatcatctcaggaaggagggggat 344

                                                                       
Query: 120 cctgacctttttagccttgaggataaaggagaggaccatgcagttactgtcctggctgtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cctgacctttttagccttgaggataaaggagaggaccatgcagttactgtcctggctgtt 284

                                                                       
Query: 180 gaaatgattggcttttgatgccctaaccttgtttctgtggaaacaaaacgagaagacagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gaaatgattggcttttgatgccctaaccttgtttctgtggaaacaaaacgagaagacagt 224

                                  
Query: 240 gtgttgtgtgtgtgtgtgtgtgg 262
           ||| |||||||||||||||||||
Sbjct: 223 gtggtgtgtgtgtgtgtgtgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space:   166370
Effective search space used:   166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)