Query= MSMg01no406_b23.b1 MSMg01no406_b23.b1 CHROMAT_FILE:
MSMg01no406_b23.b1 PHD_FILE: MSMg01no406_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:19 2005
(477 letters)
>mm_chr2_16523399_16524278
Length = 880
Score = 862 bits (446), Expect = 0.0
Identities = 466/478 (97%), Gaps = 10/478 (2%)
Strand = Plus / Plus
Query: 1 ctcatccctttgtgccctgacatatttttatttttatctagtttaaaaactattcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatccctttgtgccctgacatatttttatttttatctagtttaaaaactattcaaata 260
Query: 61 acaatggatacatagcaacctagcctagattatatttgtctttatagtaataaagttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatggatacatagcaacctagcctagattatatttgtctttatagtaataaagttatg 320
Query: 121 caat-ctaaacaccctttagaaatgaaaatgcacacagacaccttactggatccctgctg 179
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caattctaaacaccctttagaaatgaaaatgcacacagagaccttactggatccctgctg 380
Query: 180 agcctcagaaaagtactgaggatgtcagtattcaatggctatgaagctttgaaggagctt 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 agcctcagaaaagtactgaggatgtcagtattcaatggctatgaag---------agctt 431
Query: 240 tgaaggatccatgactatagatagctgagaaagggttagagaggaaatgcaatgtgaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaaggatccatgactatagatagctgagaaagggttagagaggaaatgcaatgtgaaga 491
Query: 300 ctgggtttgcatttttaggaaacctttaaaataattccattcagggctacaaagaatgag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctgggtttgcatttttaggaaacctttaaaataattccattcagggctacaaagaatgag 551
Query: 360 aatcacagctagaaaagatgttatagcaaagggatttttgttttgctttgtgtgatatga 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 552 aatcacagctagaaaagatgttatagcaaagggatttttgttttgctttgtgtgatgtga 611
Query: 420 agtgaaagcagtcttatgggtgtgggtgtatttgtgtatgtgtctttgaagaaactgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agtgaaagcagtcttatgggtgtgggtgtatttgtgtatgtgtctttgaagaaactgg 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 880
Length adjustment: 10
Effective length of query: 467
Effective length of database: 870
Effective search space: 406290
Effective search space used: 406290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_b23.g1 MSMg01no406_b23.g1 CHROMAT_FILE:
MSMg01no406_b23.g1 PHD_FILE: MSMg01no406_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:19 2005
(434 letters)
>mm_chr2_16719975_16720808
Length = 834
Score = 785 bits (406), Expect = 0.0
Identities = 427/434 (98%)
Strand = Plus / Minus
Query: 1 atgccaaagagacaagacaagtggatggtttggggtaaaagccagaaaaataatacacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 634 atgccaaagagacaagacaagtggatggtttggggtaaaagccagaaaaataatacatgt 575
Query: 61 gactggtatcttttataatatgtcaaaatatgaattttgcagactggaaatgaatgaacg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 574 gactggtatcttttataatatgtcaaaatatgaattttgcagactgaaaatgaatgaacg 515
Query: 121 aaagattaaaaactgatgctgacagcaatgccattgccttaatacacattggctttctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaagattaaaaactgatgctgacagcaatgccattgccttaatacacattggctttctgt 455
Query: 181 tatctcatgaatggaaatgtattctgaaatttatagaacggtatggaagtgagaagtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatctcatgaatggaaatgtattctgaaatttatagaacggtatggaagtgagaagtcat 395
Query: 241 agtcacatgattaattaatattaagtatgataaaggtaccaacatgtgaataaaatcaat 300
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atttacatgattaattaatattaagtatgataaaggtaccaacatgtgaataaaatcaat 335
Query: 301 catataaagattttaagcagagataattacaaatcacactgcccaaataagtgagaaata 360
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 334 catataaagattttaagcagagataattacaaatctcattgcccaaataagtgagaaata 275
Query: 361 ggaaatccagtaccctccccagaggcacctatggctataactccatcatcctataccttc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 ggaaatccagtaccctccccagaggcacctatggctctaactccatcatcctataccttc 215
Query: 421 atcatatctatcct 434
||||||||||||||
Sbjct: 214 atcatatctatcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
