BAC Information

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BAC

Clone NameMSMg01-406D12
Chromosome2 (Build37)
Map Location 117,017,263 - 117,017,640
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1
Downstream geneLOC624574, 2610510H03Rik, Rasgrp1, Thbs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406D12.T7 (MSMg01no406_d12.b1)MSMg01-406D12.TJ (MSMg01no406_d12.g1)
ACCAG504465AG504466
length731745
length of high quality
(start - end)
455 (82 - 536)378 (79 - 456)
definitionCHROMAT_FILE: MSMg01no406_d12.b1 PHD_FILE: MSMg01no406_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:27 2005CHROMAT_FILE: MSMg01no406_d12.g1 PHD_FILE: MSMg01no406_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATATTTGCGGCGCTAATACGAACACTATTCATACTCAGCCGNGG
NAATCTCTAGTACCCACAAATGGGTCAGAAATCTGATCTTCCTGCCTTTA
GCCTCCTCAGTGCATGGATTACAGGTTTGTGCCAACATACCTCGACACCC
TTTTCCTTACAGCAGTTCCTCCAAAGAGTTTTGCACCTTCATGCCTCCAA
AATCTGTTTTCTCACTTTCTCTAACGCCCCCTGTATTGAGGTTTATCTCT
CCTTGTGTCAAAACTTCTCTGCACCAATGCTGTCCACACTGCTAAAGTCA
ATGATCAACTCCNCATTGTTGTTTAATGCCATTTTCCCTGTTTTTAAAGG
CCTATCTAGTTCAATTTGTGCTGCCCACAAACTATTGTGGCTATTCACTG
AAACATGGGCAGTCTACTAGGGGCCGCACTCCTGAGGGAATCTCTCTCTC
TCTCTCCAGTGCTATTAATTACCACTAGCTCCTGAGCCAGGGATGGGATT
TCCTGCCCACCTTCCTTACACAGGTCTTGTGCATGTTGTCACTGTGAGTT
GGTATGTGCACCTTTCCCTTTGTCTACAAAACCCATTGTTTTGATGTAGC
CATAAACTGCTTCTGGCTCTTATACTCTTCCTACTCCCATTTCTGTTTTG
ATCCCTGAAACCTTGGGAAAGAGGGCGTGATACGGATATCCTATTGGTGG
ATGAGTACTTCCCAGTATTTTATTTTCTGCT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCTCCTTGTGCAGCTTG
GTAGAAATACCACCCACAGCACCTCCCTAAATCCACTTTATCAAACGTGT
GTGGCATAGCCTGCTATCTTACTTAGGAGTTTCTTGCCAGGCACAATGGT
AGACTCCTCACATAGAGCTTGTTTGTGTAGCTGTTACCCAGGTAGGAGCA
GCCAGCAGTGGCAGCTGTCTGCCATGGCGATCTCATGAGCAAAGGCCCTA
TGGTGGGAGGAAGCATGGGCTGTTTTAGTAGGCCAGTGGGACAAGGTATG
GAGCTGAAGGCTAAGGAAGCCATGTCCTGGCAGCCTTAATAGGGAGTTGT
GGTTTTGCACTATGCACAGTGAGAAGCCACTGCAGCAGATTTGAAGTTTT
AGGGGACAGATGAAGGGAACAGACCAGGTACCCATGGTGCAAGAGGAACA
AATGAATGCATAATTCTGTCTTGAGCTGAAGTCTCATACTACAGGGCTGT
GGGAGTGAGCCCTCTACCCTTATGCACTCTCTATAAAGTATATTTGCTCA
TCACGTGTTCTCCCTTTTTTGAACTAGTATGGGCTCTAAAATACTCAATC
TTTGCTTATTAAACCTGGATCCTTTTGTAAACTGGCATTTCCATCCTCCC
ATATATTTAAGGCTAGGGCTTTCCTATCCTTATGTCCATTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_d12.g1 MSMg01no406_d12.g1 CHROMAT_FILE:
MSMg01no406_d12.g1 PHD_FILE: MSMg01no406_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:27 2005
         (378 letters)



>mm_chr2_117017063_117017840
          Length = 778

 Score =  677 bits (350), Expect = 0.0
 Identities = 371/382 (97%), Gaps = 8/382 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcctccttgtgcagcttggtagaaataccacccacagcacctccctaaatccactt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctctcctccttctgcagcttggtagaaataccacccacagcacctccctaaatccactt 519

                                                                       
Query: 61  tatcaaacgtgtgtggcatagcctgctatcttacttaggagtttcttgccaggcacaatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 518 tatcaaacgtgtgtggcatagcctgctatcttacttaggagtttcttgccaggcgcaatg 459

                                                                       
Query: 121 gtagactcctcacatagagcttgtttgtgtagctgttacccaggtaggagcagccagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtagactcctcacatagagcttgtttgtgtagctgttacccaggtaggagcagccagcag 399

                                                                       
Query: 181 tggcagctgtctgccatggcgatctcatgagcaaaggccctatggtgggaggaagcatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tggcagctgtctgccatggcgatctcatgagcaaaggccctatggtgggaggaagcatgg 339

                                                                       
Query: 241 gct----gttttagtaggccagtgggacaaggtatggagctgaaggctaaggaagccatg 296
           |||    |    ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 338 gctgaaag----agtaggccagtgggacaaggtatggggctgaaggctaaggaagccatg 283

                                                                       
Query: 297 tcctggcagccttaatagggagttgtggttttgcactatgcacagtgagaagccactgca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcctggcagccttaatagggagttgtggttttgcactatgcacagtgagaagccactgca 223

                                 
Query: 357 gcagatttgaagttttagggga 378
           ||||||||||||||||||||||
Sbjct: 222 gcagatttgaagttttagggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)