BAC Information

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BAC

Clone NameMSMg01-406L04
Chromosome2 (Build37)
Map Location 134,466,212 - 134,466,452
singlet/doubletsinglet
Overlap geneTxndc13
Upstream geneHao1
Downstream geneLOC627897, LOC433478, Plcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406L04.T7 (MSMg01no406_l04.b1)MSMg01-406L04.TJ (MSMg01no406_l04.g1)
ACCAG504831AG504832
length750765
length of high quality
(start - end)
233 (72 - 304)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no406_l04.b1 PHD_FILE: MSMg01no406_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:06 2005CHROMAT_FILE: MSMg01no406_l04.g1 PHD_FILE: MSMg01no406_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTGCGGCGCTAAACGACTCACTATATTTCTGACTGCGCNGGATTCC
TAACTTATTTCTGATATTTAAACTTATCTCCTCTTATGTCACATGGTTTA
GGGATTTGAACCTCAGGCCTGCATGCTTATACAACAGTGCTCTCACCCTA
TAAGCTATATCTCCCTAGTCCTTGTTTTTTTTTTTTTTTTCTTAAGGCTG
TGAAAAATATCGTCACCTTCTCTTACTCAGTGCTAGATTCTTCTTGTTTA
CCATTTTCCTGCTTAGATTGAAACATTTGTTAATCCTTTCTTGGCTGATT
GGTCTCCTTATTCCGTAGTTCAGAGGNTNCTTTCTCTGGAGGCTCTTATA
AGATATCTTTGCCCATTTCTAGCTGAACAGTACATGTAAAAAGCAGAGTT
ATGGCTTTAAGGCCCAGATTCTTAATGTTTTCAGTTTTAAAAAGTATTGA
GTAGTTCTTTTTTCTTTGGAAAAGTTAAGAACTTTTCAAGTATATACTTG
GAAACATACTATGGGACCCAGTAGTGACAGGTCTCTGGCGTCTGCCTATC
ATTTCTGGAGATTTGAGAGACCTGAAAATGCCTTGGTTAGTAATGGCATA
TCCCTGAACGGCATTTTACTTTGGAGGGTTGAAACACGCCTTCTTCTTAT
TTTTTTCTCACACTATAACCTTTATTTACCTTCTTTTAAACCAAATTATT
GGAAGAAAATGGACGCTGTGCATTATTTTCGAATCTATTTCCTTCTTCTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTCACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCATATTTTTTTTCTTAGTACTACTGGAGGACCCA
GCAATACCTCTCCTGGGTATATATCCAGAAGATGTCCCAACTGGTAAGAA
GGACACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCTTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACTCAATGGAGTACTACTCATCTATTAAAAAGAATGAATT
TATGAAATCTCCTATCCATATGGATGGACCCTGGAGGGCATTATTCTGAG
TGATGTTACACCTCCTCCAAGAATCTCTCACTTTATGTATTTTCTGATAT
TGTGATATTATCCTCCATCCCTATTATATACCCGATTCCTTATTTCCTTC
TGCTTTTACATAGGTACCCTTCAGTTATAATTGAACACTGTAAGCTGGGT
ACACATCTGTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_l04.b1 MSMg01no406_l04.b1 CHROMAT_FILE:
MSMg01no406_l04.b1 PHD_FILE: MSMg01no406_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:06 2005
         (233 letters)



>mm_chr2_134466134_134466766
          Length = 633

 Score =  397 bits (205), Expect = e-115
 Identities = 227/241 (94%), Gaps = 11/241 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttatctcctcttatgtcacatggtttagggatttgaacctcaggcctgcatgcttata 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 acttatctcctcttatgtcacatggtttagggatttgaacctcaggtctgcatgcttata 260

                                                                       
Query: 61  caacagtgctctcaccctataagctatatctccctagtccttg-----------tttttt 109
           ||||||||||||||||||||||||| |||||||||||||||||           ||||||
Sbjct: 259 caacagtgctctcaccctataagctgtatctccctagtccttgttttttttttttttttt 200

                                                                       
Query: 110 ttttttttttcttaaggctgtgaaaaatatcgtcaccttctcttactcagtgctagattc 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttttttttttcttaaggctgtgaaaaatatcgtcaccttctcttactcagtgctagattc 140

                                                                       
Query: 170 ttcttgtttaccattttcctgcttagattgaaacatttgttaatcctttcttggctgatt 229
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttcttgtctaccattttcctgcttagattgaaacatttgttaatcctttcttggctgatt 80

            
Query: 230 g 230
           |
Sbjct: 79  g 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)