Query= MSMg01no407_n09.b1 MSMg01no407_n09.b1 CHROMAT_FILE:
MSMg01no407_n09.b1 PHD_FILE: MSMg01no407_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:36 2005
(609 letters)
>mm_chr2_29913751_29914754
Length = 1004
Score = 911 bits (471), Expect = 0.0
Identities = 490/499 (98%), Gaps = 5/499 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttagcctgccagaggttggtacaaccactgtggaaaactgggctgggtcaaag 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggaattcttagccagtcagaggttggtacaaccactgtggaaaactgggctgggtcaaag 435
Query: 64 agcctagagatgagcaccttctgctgttacctagcaacgaccccccccccccccgctgtg 123
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 434 agcctagagatgagcaccttctgctgttacctagcaacga-----cccccccctgctgtg 380
Query: 124 tcgctaacagaagtgtatgcacagatgcacctacatacttgagaaagtttggtggtctag 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 tcgctaacagaagtgtatgcacagatgcaccgacatacttgagaaagtttggtggtctag 320
Query: 184 gtttcataatagcccaccagaactataagaaaccgaaagaagaattaatgttgaatgaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtttcataatagcccaccagaactataagaaaccgaaagaagaattaatgttgaatgaaa 260
Query: 244 tacaagagacaaaatggtacatggtgggctctcttctgcgtgagttacagaagaaggcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tacaagagacaaaatggtacatggtgggctctcttctgcgtgagttacagaagaaggcca 200
Query: 304 ggcctgatggctcacatttagaatcagtgggaccaggaggctgaaataggaggactgatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggcctgatggctcacatttagaatcagtgggaccaggaggctgaaataggaggactgatg 140
Query: 364 cagaagaaagccagcctgcgatggatgcagagggaggccttgtcttcaaaaaggaggcag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 cagaagaaagccagcctgcgatggatgcagagggaggccttgtcttcaaaaaggaggcag 80
Query: 424 aggatggcaggattgctcagtgggtaaacacatttacctgactgcttgggtttgatctct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 aggatggcaggattgctcagtgggtaaacacatttacctgactgcttgggtttgatctct 20
Query: 484 gggacatagaaggtggaaa 502
|||||||||||||||||||
Sbjct: 19 gggacatagaaggtggaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1004
Length adjustment: 10
Effective length of query: 599
Effective length of database: 994
Effective search space: 595406
Effective search space used: 595406
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_n09.g1 MSMg01no407_n09.g1 CHROMAT_FILE:
MSMg01no407_n09.g1 PHD_FILE: MSMg01no407_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:36 2005
(474 letters)
>mm_chr2_29755938_29756811
Length = 874
Score = 857 bits (443), Expect = 0.0
Identities = 461/467 (98%)
Strand = Plus / Plus
Query: 8 atcctgagtgctgggattaaaaaggcatggccacctcttgcaccaccatgtgtttgtttg 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 208 atcctgagtgctgggattaaaaaggcatggccaccacttgcaccaccatgtgtttgtttg 267
Query: 68 tttctttttctcttttttaaaaggttgagtgtctttatgttgcctgatctgatcttgaac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttctttttctcttttttaaaaggttgagtgtctttatgttgcctgatctgatcttgaac 327
Query: 128 tcctcttccagaagtctcagcctccccagtagctgggactattcaggcacacagcacaca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcctcttccagaagtctcagcctccccagtagctgggactattcaggcacacagcacaca 387
Query: 188 aacctagccttctttataacttaacattctaacccatgcctttttcaatgttagaaattc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacctagccttctttataacttaacattctaacccatgcctttttcaatgttagaaattc 447
Query: 248 ttcaaaaccatcatttagacttgggcaggtaatgtttccttcaggagggtctggagtggt 307
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 448 ttcaaaaccatcatttagacttgggcaggtaatgtttccttcaggagggtctagagtggt 507
Query: 308 tgattcctgggcaggagctctgggttgccattgcagtgtgtcggctctgccagccacttt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 508 tgattcctgggcaggagctctgggttgccattgcagtgtgtcggctctgccagtcacttt 567
Query: 368 ggcagtcagcaaaactccacagagcaaataagtacacttctgtccgaggctcggccttag 427
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 568 ggcagtcagcaaaactccacagagcaaataagtacacttccgtccgaggcttggccttag 627
Query: 428 cagcttatctatctctcactcctttgcatcagaatccacctcattgc 474
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 628 cagcttatctatctttcactcctttgcatcagaatccacctcattgc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
