Query= MSMg01no407_o08.b1 MSMg01no407_o08.b1 CHROMAT_FILE:
MSMg01no407_o08.b1 PHD_FILE: MSMg01no407_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:41 2005
(559 letters)
>mm_chr2_86115997_86116955
Length = 959
Score = 913 bits (472), Expect = 0.0
Identities = 532/552 (96%)
Strand = Plus / Plus
Query: 4 ggaattccaatgtgcacttgacagcgtctctgagacattatagcactatagagcagaggg 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaatgagcacttgacagcgtctctgagacattatagcactatagagcagaggg 263
Query: 64 ttgcaaatagccatatagcggtcataggccatggaggacaagattgaaagttcactgaca 123
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgcagatagccacatagcggtcataggccatggaggacaagattgaaagttcactgaca 323
Query: 124 atgaacagaatgaagcatgccatctgtgtggcacaagcataataggtgatggtgttttta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaacagaatgaagcatgccatctgtgtggcacaagcataataggtgatggtgttttta 383
Query: 184 tccacaacaaaattcaccagcatcttggggcagatagcagtggaatttccaagatcaatg 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 tccacaacaaaattcaccagcatcttggggcagatggcagtggaatttccaagatcaatg 443
Query: 244 aaagcaaggtgtctgatgaaaaagtacataggggtttgtaggcgagagtccagtttggtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagcaaggtgtctgatgaaaaagtacataggggtttgtaggcgagagtccagtttggtc 503
Query: 304 aaaatgatcatgccgaggtttcccaccacggtaattgcatagatagcaaggaagactgca 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 aaaatgatcatgccgaggtttcccaccacggtgattgcatagatagcaaggaagactgca 563
Query: 364 aacagtgggagtttcagctcagcagtctgtgtgactcccatcaggatgaactcagttggc 423
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 aacagtgggagtttcagctcagcactctgtgtgactcccatcaggatgaactcagttggc 623
Query: 424 attgttatatttggttgccccattggatgatccaaaattaactcgtcctaaaaaaacagt 483
|||||||||||||||||||||||||||||||| ||||||||||| || | || ||||| |
Sbjct: 624 attgttatatttggttgccccattggatgatctaaaattaactcttcttgaagaaacaat 683
Query: 484 aaggatttattagatttctttcattaccatataaactttgtattagtcatggttagatca 543
|||||||||||||||||||||||| |||||||||||| ||| || ||| ||| |||||
Sbjct: 684 taggatttattagatttctttcattgccatataaacttcgtactattcacagtttgatca 743
Query: 544 gttaaatatttt 555
||||||||||||
Sbjct: 744 gttaaatatttt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_o08.g1 MSMg01no407_o08.g1 CHROMAT_FILE:
MSMg01no407_o08.g1 PHD_FILE: MSMg01no407_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:41 2005
(549 letters)
>mm_chr2_86342704_86343651
Length = 948
Score = 973 bits (503), Expect = 0.0
Identities = 540/557 (96%), Gaps = 9/557 (1%)
Strand = Plus / Minus
Query: 1 tttactgcttacaaggttaacaatcccatggggacatagcgataatgggtaagtacacaa 60
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 771 tttactgctttcaaggttaacaatcccatggggacatagcgataatgagtaagtacacaa 712
Query: 61 taaataaaaatatattacaaagtagaggtggggatataatttattgacatggacatta-- 118
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 711 taaataaaaatatattacaaagtagaggtggggatataatttattgacatgggcattata 652
Query: 119 ------taatgtttacaaaatatttgctgacacatatgtgaatgtttattgctttttgaa 172
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 651 atgttttaatgtttacaaaatatttgctgacacatatgtgaatgtttattccttttttaa 592
Query: 173 atttttatttcatgtttctgtagttatatttgcatagtaaaatgtaatcagtaatatgtt 232
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atttttatttcatgtttctatagttatatttgcatagtaaaatgtaatcagtaatatgtt 532
Query: 233 ataaagcatataatatttatcctgcaatagtggctatgaatatattaaaaattccatcac 292
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ataaagcatataaaatttatcctgcaatagtggctatgaatatattaaaaattccatcac 472
Query: 293 caatcatggaaaactgaattatgaaatgcttaaacttacagacacagtagctaaaagtgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caatcatggaaaactgaattatgaaatgcttaaacttacagacacagtagctaaaagtgt 412
Query: 353 tatattgtaaaagtaattgagtagatatgtaagtttactactgtagatcaaacaccaatt 412
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tatattgtaaaagttattgagtagatatgtaagtttactactgtagatcaaacaccaatt 352
Query: 413 gaattaataggaagaaatcagagaatatatgaacatataaattctttattaattttaatt 472
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaattaataggaa-aaatcagagaatatatgaacatataaattctttattaattttaatt 293
Query: 473 tagtatgtgtacacattggtaaatttggggaaatactccattaatagctctttttctact 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagtatgtgtacacattggtaaatttggggaaatactccattaatagctctttttctact 233
Query: 533 gtcccaacctgaactgc 549
|||||||||||||||||
Sbjct: 232 gtcccaacctgaactgc 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
