CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACTTCTATCTTTCAAGGCTATAACAATCAAATGTTGAAAAAAAA
ACGATCATAAGCAAACATCTCATTTCGAAACCCCAAACATTCATTCTGGC
TATTTTAATAAGAACGAGCCTACTAAAGGTTACTTTATACTCAGATGCTG
TAAAATAGTCATCTTTTCTTCCAACTACATCCAAGTCTATGAGGTACCAT
TTACTTTTAAATGAGGATTAGTATGGAAGAAATACGTTTATCGAATGTGA
AATTTCATTACCTATCTTAAGGAAACTCACGTAGACAATCGTTGTAACCT
GAGGAACATTTAAGAACATCAGTACCTTGCCTCACTCACTGAATGCCTAC
AAGTTCAATGCATTAAAAGACGCTCGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTNNNTTNNTNNTTTTTTTTTTNNTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTT
TTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAG
AGAAGCACCTGAAAAAAATGCTCAACATCCTTAAGCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATAGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGAAATTAACCCCAAACCTAAGATACCCCAGATATAGAATACATTTTC
TAAACCCTTGAACTCCAGAAAAATGAAAACTGAGGTGGAACCCTAGGCCC
CTCCTA

Query= MSMg01no407_o14.b1 MSMg01no407_o14.b1 CHROMAT_FILE:
MSMg01no407_o14.b1 PHD_FILE: MSMg01no407_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:42 2005
         (419 letters)



>mm_chr2_83485296_83486113
          Length = 818

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacttctatctttcaaggctataacaatcaaatgttgaaaaaaaaacgatcat 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 580 gaattctcacttctatctttcaaggctataacaatcaaatgttg-aaaaaaaacgatcat 522

                                                                       
Query: 65  aagcaaacatctcatttcgaaaccccaaacattcattctggctattttaataagaacgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aagcaaacatctcatttcgaaaccccaaacattcattctggctattttaataagaacgag 462

                                                                       
Query: 125 cctactaaaggttactttatactcagatgctgtaaaatagtcatcttttcttccaactac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cctactaaaggttactttatactcagatgctgtaaaatagtcatcttttcttccaactac 402

                                                                       
Query: 185 atccaagtctatgaggtaccatttacttttaaatgaggattagtatggaagaaatacgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atccaagtctatgaggtaccatttacttttaaatgaggattagtatggaagaaatacgtt 342

                                                                       
Query: 245 tatcgaatgtgaaatttcattacctatcttaaggaaactcacgtagacaatcgttgtaac 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 tatcgaatgtgaaatttcattacctatcttaaggaaactcaagtagacaatcgttgtaac 282

                                                                       
Query: 305 ctgaggaacatttaagaacatcagtaccttgcctcactcactgaatgcctacaagttcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctgaggaacatttaagaacatcagtaccttgcctcactcactgaatgcctacaagttcaa 222

                                                            
Query: 365 tgcattaaaagacgctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 413
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcattaaaagacgctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space:   331690
Effective search space used:   331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)